Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1190
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 32 0.55
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 0.95
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 30 1.7
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290... 29 3.9
03_01_0545 - 4086692-4087591 29 3.9
06_03_1448 + 30235336-30236763 29 5.1
06_03_1443 + 30182018-30183445 29 5.1
06_03_1440 + 30166515-30167942 29 5.1
06_03_1437 + 30151030-30152457 29 5.1
06_03_1429 + 30100834-30102261 29 5.1
06_03_1425 + 30084383-30085810 29 5.1
06_03_1420 - 30053713-30055140 29 5.1
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.1
03_04_0006 + 16257288-16259522 29 5.1
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 5.1
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 6.7
12_02_0077 - 13288916-13289659,13289689-13289691 28 8.9
12_01_0843 + 7891622-7892524 28 8.9
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 8.9
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 8.9
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 28 8.9
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 8.9
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -1
Query: 706 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 584
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 311 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 457
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = -3
Query: 530 QRRSRETTPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWESR 360
QR S E Y TP + Y A SSS GSS P P+A++ + E R
Sbjct: 290 QRSSFEQKTNYQTPASALYGAYEGSSSQGSSSGYGEPPKDPVALMEFYMKKAAQEER 346
>10_07_0045 +
12328388-12328419,12328504-12328645,12328862-12329054,
12329224-12329320,12329404-12329528,12329616-12329734,
12331225-12331298,12331359-12331413,12331450-12331500,
12331611-12331857,12331940-12332036,12332170-12332244,
12334286-12334488,12334757-12334905,12334995-12335168,
12335276-12335401,12335493-12335623,12335743-12335818,
12335898-12336027,12336115-12336193,12336267-12336465,
12336591-12336698,12336769-12337025,12337267-12337282
Length = 984
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 477 RRHERCSISGSRFARSSLKNHYFHCFITYSVGRKRCAVDN 596
+RH C +SG +F + + Y HC + K+ +N
Sbjct: 537 KRHLTCLLSGDKFLNDDVISAYIHCLSEQANNDKKVKYEN 576
>03_01_0545 - 4086692-4087591
Length = 299
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -3
Query: 650 SATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETTPTYATPLMSPYN 471
+AT+PL R PA + R LPP + + +R +T ++P SP
Sbjct: 184 AATAPLMMTSPSPRTPAAAVARWDLPPRGRGVFVLSISPLRREISVSTEAPSSPEPSPQR 243
Query: 470 ARLESSS 450
R ++S
Sbjct: 244 HRHRAAS 250
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 711 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 574
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 711 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 574
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 711 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 574
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 711 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 574
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 711 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 574
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 711 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 574
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 711 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 574
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 639 TTLHAWNETPCARRYY 592
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>03_04_0006 + 16257288-16259522
Length = 744
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = -3
Query: 536 VFQRRSRETTPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 366
V RRS T Y T L + ARL T PA SP +AV S + G W+
Sbjct: 160 VAARRSPWTV-VYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 647 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 736
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 726 PPQSNSPPGSVLEPDHAGVLNGDE 655
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 461 ESSSTGSSFPADSPKPVPLAVVSLDSR 381
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>12_01_0843 + 7891622-7892524
Length = 300
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = -3
Query: 584 APLPPNRVSNETMKVVVFQRRSRETTPTYATPLMSPYNARLESSSTGSSFPADSPKPVPL 405
AP P V+ +T+ VV + E L SP SSS+G + SP P P
Sbjct: 66 APAPAPSVAGKTVPKVVGDCKEMEREKEKEKSLSSP-----SSSSSGMTSVESSPPPPPS 120
Query: 404 AVVSL 390
A++ L
Sbjct: 121 AMLPL 125
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 117 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 245
C T RS N H + CL+ +H G NVI +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 603 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 725
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 117 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 245
CT++ +R A W G G L HC P V+S +CS
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 491 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 384
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,253,283
Number of Sequences: 37544
Number of extensions: 509666
Number of successful extensions: 1645
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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