Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1190
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    32   0.37 
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    32   0.37 
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   3.4  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   3.4  
Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = -3

Query: 665 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETTPTYATPL 486
           T+ +   TSP  T+GT   APA++      P N  S+ T         S  T PT   P+
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPV 681

Query: 485 MSPYNARLESSSTGSSFPADSPKPVPLAVV 396
            +       S++T ++    + +  P   V
Sbjct: 682 TTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 711


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = -3

Query: 665 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETTPTYATPL 486
           T+ +   TSP  T+GT   APA++      P N  S+ T         S  T PT   P+
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPV 737

Query: 485 MSPYNARLESSSTGSSFPADSPKPVPLAVV 396
            +       S++T ++    + +  P   V
Sbjct: 738 TTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 767


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 150 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 248
           W+  G   C+ + K CDG + C       QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 150 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 248
           W+  G   C+ + K CDG + C       QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299


>Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical
           protein T10H4.10 protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 10  RLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 135
           +L  R   G   +G   IF  VR    RF++ R D++  PFN
Sbjct: 205 KLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246


>U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical protein
            F32E10.3 protein.
          Length = 876

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
 Frame = -3

Query: 701  AVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRR 522
            AV+    T E  + T+  +T P     T   AP+       +   +VS E M+ +V +  
Sbjct: 751  AVTPAPTTSEKTSTTAAPSTKPAEETTTTTEAPSTTTKPVTVAVKKVSPEEMEKLVKKES 810

Query: 521  SRETT-----PTYATPLMSPYN-ARLESSSTGSSFPA 429
            + + T     PT+  P ++P+    L + +T    PA
Sbjct: 811  TEKVTLLPPLPTFTFPTLAPFTFPTLPTLATTKPSPA 847


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,651,616
Number of Sequences: 27780
Number of extensions: 385425
Number of successful extensions: 1205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)