Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1189
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    32   0.071
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    29   0.66 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   1.2  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    27   3.5  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   4.7  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   6.2  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   8.2  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   8.2  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   8.2  

>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 32.3 bits (70), Expect = 0.071
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 151 RDKNNEASKRSRMNRKLKELQMEQLAIDLEER 246
           R +N  AS R R+ +KLKE Q+E+ A +L E+
Sbjct: 271 RRRNTAASARFRIKKKLKEQQLERTAKELTEK 302


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 163 YSCLSTLYTLILEWKYLMNFHQCCMWMIVCCLVSWGVGLFF 41
           Y+   TL T +   +YL++FH     ++   ++ +GVGLF+
Sbjct: 510 YAIYLTLSTFVCSSRYLLDFHYLTQ-VVYGYMIGFGVGLFW 549


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 109 SSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNKN*E 261
           S  +    SK  ELR       KRS+ NRK      E+ A+DL+  N + E
Sbjct: 93  SDIVDAVSSKDEELRKHAKGEGKRSK-NRKRSSKHSEKQAVDLKSSNSSQE 142


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 70  DSTLSSTCSIDENSSNISTQESKYRELRDK-NNEASKRSRMNRKLKELQMEQLAI 231
           D  L + CS+ + S N  +QE   RELRDK  N+ S      +K++   ++  AI
Sbjct: 701 DIRLYNDCSL-KYSLNTLSQEKILRELRDKLQNDHSSIFDAFQKMRNYMLQHQAI 754


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 127 QESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLE 240
           Q+  Y+++  +N  AS   ++  K++ELQ  QL  DL+
Sbjct: 183 QQKLYKDMEQEN--ASTIQKLTSKIRELQASQLDHDLQ 218


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 409 VVDLLSNKMQMLMSFNNTQNIHNLLHFCKIAAINASFTFLVSSS 278
           VVDL S K   L+    T+++  LL  CK     ++FT  +SSS
Sbjct: 97  VVDLPSKKQNRLLQSCITKHVDRLLDLCKRNL--STFTIDISSS 138


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 400 LLSNKMQMLMSFNNTQNIHNLLHFCKI-AAINASFTF 293
           L +N    L +FNN  ++ N L+F  + AA  A FTF
Sbjct: 115 LSNNAHDSLPTFNNGSDLFNPLYFAVLNAATPARFTF 151


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 154 LSTLYTLILEWKY-LMNFHQCCMWMIVCCLVSWGVGLFF 41
           +  ++ ++LE +  L+  H+C  +M++C +V +  G+FF
Sbjct: 873 IKDVFNVLLEGRCSLILSHRCFQYMVLCAIVQFS-GVFF 910


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
            Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +1

Query: 79   LSSTCSIDENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERN 249
            +S     DE SS +   +    E  D +NE      ++ + + L  E L   + E+N
Sbjct: 910  ISDESETDEESSGLEESDLLDSEDEDIDNEMQLSRELDEEFERLTNESLLTRMHEKN 966


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 100 DENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAIDLEERNK 252
           D  + ++  Q  + R+ R  + E +     N KL  LQM   A+ LEE NK
Sbjct: 77  DGGAPSLKRQTIQKRQARRLDREENATVTAN-KLLALQMRHQAMLLEENNK 126


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +2

Query: 209 YRWNNWQLIWKKEIKTKS*SRYFGRADQKSKRCIDGCNFTEMKQIVN 349
           Y  NN QL  +K+ + KS + ++G A +  ++ I+G  FT  K +VN
Sbjct: 37  YMRNNVQLAGEKD-ELKS-TIHYGIASKLLRKEIEGSFFTTPKDLVN 81


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 258 RVKADILEELTKKVKDALMAAILQK 332
           R+K  ILE++ +KV D L A + +K
Sbjct: 55  RIKKPILEKVVEKVLDTLKAEVEEK 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,670
Number of Sequences: 5004
Number of extensions: 54938
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)