Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1189
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0412 - 3005600-3007759                                           32   0.40 
02_01_0411 - 2998806-3000938                                           31   0.91 
02_01_0413 - 3028946-3031111                                           31   1.2  
02_01_0422 - 3084940-3087072                                           29   4.9  
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822...    28   6.4  
02_05_0828 + 32057670-32057851,32060054-32060132,32060808-320608...    28   8.5  

>02_01_0412 - 3005600-3007759
          Length = 719

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = -2

Query: 490 IKDTYYPCQYATCIVLLCSLVKTEKSTVVDLLSNKMQMLMSFNNTQNIHNLLHFCKIAAI 311
           I ++ Y C   T + L  + +  + +  +  L + + + +S+NN  NI N LH  K +  
Sbjct: 366 IPESIYSCSNLTSLRLSANRLHGQLTKNIGNLKSIIFLSISYNNFTNITNTLHILK-SLR 424

Query: 310 NASFTFLVSSSKISAL 263
           N S  F+ S+ K  A+
Sbjct: 425 NLSVLFMGSNFKNEAM 440


>02_01_0411 - 2998806-3000938
          Length = 710

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 21/76 (27%), Positives = 37/76 (48%)
 Frame = -2

Query: 490 IKDTYYPCQYATCIVLLCSLVKTEKSTVVDLLSNKMQMLMSFNNTQNIHNLLHFCKIAAI 311
           I ++ Y C   T + L  + +  + S  +  L +   + +S+NN  NI N LH  K +  
Sbjct: 356 IPESIYSCSNLTWLRLSANRLHGQLSKNIGNLKSITFLSISYNNFTNITNTLHILK-SLR 414

Query: 310 NASFTFLVSSSKISAL 263
           N +  F+ S+ K  A+
Sbjct: 415 NLTVLFMGSNFKNEAM 430


>02_01_0413 - 3028946-3031111
          Length = 721

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -2

Query: 490 IKDTYYPCQYATCIVLLCSLVKTEKSTVVDLLSNKMQMLMSFNNTQNIHNLLHFCK 323
           I ++ Y C   T + L  + +  E +  ++ L +   + +S+NN +NI N LH  K
Sbjct: 367 IPESIYSCSNLTWLRLSTNKLHGELTKKIENLKSITFISLSYNNFKNITNTLHILK 422


>02_01_0422 - 3084940-3087072
          Length = 710

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 490 IKDTYYPCQYATCIVLLCSLVKTEKSTVVDLLSNKMQMLMSFNNTQNIHNLLHFCK 323
           I ++ Y C   T + L  + +  + +  +  L++   + +S+NN  NI N LH  K
Sbjct: 354 IPESIYSCSNLTWLRLSSNRLHGQLTKNIQNLNSITFLSLSYNNFTNIKNTLHILK 409


>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
            22582341-22582477,22582567-22582683,22583277-22583440,
            22583542-22583756,22583838-22584004,22584206-22584559,
            22584647-22584795,22584907-22585030,22585132-22585371,
            22585723-22586140,22586297-22586920,22586999-22587183,
            22587302-22587412,22587583-22587789,22587869-22587967,
            22588063-22588159,22588296-22588384,22588495-22588548,
            22588671-22588793,22588872-22588940,22589020-22589089,
            22589202-22589260,22589367-22589570,22590032-22590060,
            22590375-22590433,22590513-22590634,22591637-22591830,
            22591974-22592088
          Length = 1680

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = -2

Query: 433  LVKTEKSTVVDLLSNKMQMLMSFNNTQNIHNLLH 332
            L  T+++ ++D+L + ++   S+N+T N+   +H
Sbjct: 1493 LKTTQQTAIMDILLSLLEFASSYNSTSNLRTRMH 1526


>02_05_0828 +
           32057670-32057851,32060054-32060132,32060808-32060869,
           32060993-32061092,32061169-32061210,32062057-32062098,
           32062189-32062343,32063609-32063636
          Length = 229

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +1

Query: 100 DENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQMEQLAID-LEERNKN*E 261
           ++ S +++ + SKY  L ++  EAS R    R+++  ++E L+ID L++  KN E
Sbjct: 80  EQPSLDLNLEHSKYAHLNEQLAEASLRL---RQMRGEELEGLSIDELQQLEKNLE 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,495,577
Number of Sequences: 37544
Number of extensions: 302271
Number of successful extensions: 738
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)