Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1189
         (716 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    26   1.0  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    25   3.1  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    25   3.1  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 154 DKNNEASKRSRMNRKLKEL--QMEQLAIDLEERNKN 255
           D   + +K+  + +K++E     EQL + ++E NKN
Sbjct: 419 DLKKDIAKQGELEKKIQEHTESFEQLRVQIDEHNKN 454


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 333 ISVKLQPSMHLLLFWSALPKYLL*LLVFISFF 238
           +S KLQ ++   +F + LP  L+ +L ++SF+
Sbjct: 214 LSFKLQRNIGYFVFQTYLPSILIVMLSWVSFW 245


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 94  SIDENSSNISTQESKYRELRDKNNEASKRSRMNRKLKELQME 219
           S+    + I+ +E+K REL  K  E        +K KE++ +
Sbjct: 23  SLQAIEARIADEEAKQRELERKRAEGESDFGRKKKKKEIRYD 64


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 689,849
Number of Sequences: 2352
Number of extensions: 12963
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 72765525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)