Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1187
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    27   0.17 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.68 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.7  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   2.7  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   8.4  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 357 PLMSPYNARLESSSTGSS--FPADSPKPVPLAVVSLVVDR 244
           PL+ P   R  S+++ +S   P+ SP+P  +  +SLVV R
Sbjct: 197 PLLVPIPQRTASTASSASNYSPSQSPEPESVRPLSLVVRR 236


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 220 WINEIPTVPI 249
           W+NEIPT+P+
Sbjct: 321 WLNEIPTMPV 330


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 389 SSLKNHYFHCFITYSVGRK 445
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 553 VRGHCQAGSLTRAVHLSRITQCP 621
           +R H  +GS+TR++ L+    CP
Sbjct: 147 IRVH-HSGSITRSIRLTITASCP 168


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 193 RHLISDAHEWINEI 234
           RHLI    +W NE+
Sbjct: 91  RHLIDHKRDWWNEL 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,071
Number of Sequences: 336
Number of extensions: 2839
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)