Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1187
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0854 + 25400855-25403741,25406174-25407708                       30   1.7  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   1.7  
01_06_0456 + 29521282-29522064                                         28   5.2  
02_05_0212 - 26808484-26809368                                         28   6.9  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    28   6.9  
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51...    27   9.2  
04_01_0605 + 7944514-7944637,7944930-7945198,7945467-7945559,794...    27   9.2  
02_05_1081 + 33971950-33972606                                         27   9.2  
02_02_0137 - 7110206-7110829                                           27   9.2  

>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -3

Query: 384 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLVV 250
           AKR+PT  T    P  AR  +++   +F   +P P P +V+S V+
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVISPVL 518


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 202 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 101
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>01_06_0456 + 29521282-29522064
          Length = 260

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 572 AWQC--PRTGSRGSFKRRRAFPPLTT 501
           AW+C  P +G+RG  +RRR  P  TT
Sbjct: 12  AWRCYSPASGARGGSRRRRRRPAGTT 37


>02_05_0212 - 26808484-26809368
          Length = 294

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 396 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLVVDRDSGN 232
           S   +K  P  A+  +SP   R +  +  +S P  SP PVPL  V  + +  +G+
Sbjct: 56  SSSSSKAKPA-ASSKVSPAKPR-KPKAKAASVPPSSPPPVPLGPVPALTELPAGH 108


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 513 RKRSSPFKTPA*SGSRTLPGGEFD*GGTSV 602
           +KR  P K PA S S+ LPG + + G  SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368


>07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-518900,
            519883-520638,520990-521164,521303-521387
          Length = 1160

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 203  LVTRMNGLTRFPLSLSTTSETTAKGTGLGES 295
            ++TR N L +FP +L+ T +   KG  + ES
Sbjct: 1100 VITRKNNLCKFPKNLNDTKKNWVKGDLVRES 1130


>04_01_0605 +
           7944514-7944637,7944930-7945198,7945467-7945559,
           7945824-7945958,7946448-7946538,7947837-7947929,
           7948418-7948578,7948589-7948675
          Length = 350

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 324 SSSTGSSFPADSPKPVPLAVVSLVVDR 244
           SS+T      D PKP PL V+ LV D+
Sbjct: 293 SSTTLVKVTCDGPKPSPLTVLGLVSDQ 319


>02_05_1081 + 33971950-33972606
          Length = 218

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -3

Query: 387 RAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLVVDR 244
           R + SPT   P        +     G   P  SP P P+A  +  VD+
Sbjct: 83  RKQGSPTKELPKQRLVMGEIRILKRGEEPPVSSPSPAPVAAQAAAVDQ 130


>02_02_0137 - 7110206-7110829
          Length = 207

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 339 NARLESSSTGSSFPADSPKPVPLAVVSLVVDRDSGN 232
           N R  +S T  S P+  P+P  + V S VVD   GN
Sbjct: 136 NYRSVTSVTEFSSPSSPPRPYCVVVESYVVDVPEGN 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,409,082
Number of Sequences: 37544
Number of extensions: 365349
Number of successful extensions: 1151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)