Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1187
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 9e-12
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35) 63 2e-10
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 47 1e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_45187| Best HMM Match : Sulfolobus_pRN (HMM E-Value=0.95) 32 0.43
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 29 3.1
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 3.1
SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44) 29 4.1
SB_1261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_40420| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 7.1
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 28 7.1
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 7.1
SB_53612| Best HMM Match : SRCR (HMM E-Value=0) 28 7.1
SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4) 28 7.1
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 28 7.1
SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 28 7.1
SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6) 28 7.1
SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8) 28 7.1
SB_36043| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_52459| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_46457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.4
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/40 (80%), Positives = 35/40 (87%)
Frame = -3
Query: 375 SPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSL 256
+PTY+TPLMS + RLESSSTGSSFPAD KPVPLAVVSL
Sbjct: 88 TPTYSTPLMSFHRVRLESSSTGSSFPADCAKPVPLAVVSL 127
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = -2
Query: 532 NGDERFRHSPLCTLGTKHGAPADIIDGAPLPPNRVSNETMKVVVFQRR 389
+ DE RH +C T + P G+ LP +R+S +T++VVVF RR
Sbjct: 41 DSDECLRHGSVCKRETLN--PEREPCGS-LPLHRISKKTIRVVVFHRR 85
>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
Length = 521
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -1
Query: 116 HSEHWAEITLRQHPRGPSQCFVLIRQSDSPCPCQF 12
++EHWAEITLRQH PSQCFVLI+QSDSP CQF
Sbjct: 48 NNEHWAEITLRQHRFRPSQCFVLIKQSDSPSHCQF 82
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 187 MPRHLISDAHEWINEIPTVPI 249
MPRHLISDAHEWINEIPTVPI
Sbjct: 1 MPRHLISDAHEWINEIPTVPI 21
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +2
Query: 104 SALNVNVKKFKQARVNGGSNYDSL 175
+ALNV VKKF QARVNGGSNYDSL
Sbjct: 28 AALNVKVKKFNQARVNGGSNYDSL 51
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +2
Query: 107 ALNVNVKKFKQARVNGGSNYDSL 175
ALNV VKKF QARVNG SNYDSL
Sbjct: 2 ALNVKVKKFNQARVNGWSNYDSL 24
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +2
Query: 101 PSALNVNVKKFKQARVNGGSNYDS 172
PSALNV VKKF QARVNGG +S
Sbjct: 31 PSALNVKVKKFNQARVNGGDPLES 54
>SB_45187| Best HMM Match : Sulfolobus_pRN (HMM E-Value=0.95)
Length = 108
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -3
Query: 621 RTLRYS*QMYRPSQTPRLAVSSNRI 547
+T Y +M RPSQTP L VSS RI
Sbjct: 62 QTREYGQKMCRPSQTPNLTVSSTRI 86
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = -3
Query: 615 LRYS*QMYRPSQTPRLAVSSNRI----TREF*TATSVSATHHSARLERNTVRPPILSTAH 448
LRY Q+ S P +A SSNR+ +E +SV+ S L +++ RP ++S +H
Sbjct: 446 LRYMCQVVNGSSLPTIATSSNRVGTSSLKETPVLSSVTIATSSYSLLKSS-RPAVISPSH 504
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 31 ESDCLIKTKHCDGPRGC*RNVISAQCSE 114
E DC+ +KHCDG C C E
Sbjct: 73 EGDCIPLSKHCDGTWDCQHGTDEMDCQE 100
>SB_36343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 378 RSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLVVD 247
R PT P + Y +S TG +F AD P+ VP+ VS ++
Sbjct: 117 RRPTDDPPPLPDYVMVRFTSYTGPAFIADDPQVVPIVPVSRSIE 160
>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
Length = 950
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 550 DHAGVLNGDERFRHSPLCTLGTKHGAPADIIDGAPLPPNRVSNE 419
++ G + E R T G + G AD+IDGA PP + E
Sbjct: 760 NNTGRVTNSEPIRTIGETTNGKEAGNAADVIDGAGAPPEGLEQE 803
>SB_1261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -2
Query: 553 PDHAGVLNGDERFRHSPLCTLGTKHGAPADIIDGAPLPPNRVSNETMKVVVFQ 395
P H +G RH P TL A +ID AP PP+ + +F+
Sbjct: 38 PSHPKGRSGRSGLRHPPTRTLPYLQPARHRVIDEAPPPPSHPQKRKRGLNIFE 90
>SB_40420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 39
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 596 CTALVKLPAWQCPRTGS 546
C A KLP WQC R GS
Sbjct: 2 CAAPAKLPTWQCLRHGS 18
>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 732
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 364 ISGRSFRAIVAEKPLLSLFH 423
+ GR F I KPLLSLFH
Sbjct: 374 VFGRDFDIITDHKPLLSLFH 393
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 364 ISGRSFRAIVAEKPLLSLFH 423
+ GR F I KPLLSLFH
Sbjct: 1317 VFGRDFDIITDHKPLLSLFH 1336
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 364 ISGRSFRAIVAEKPLLSLFH 423
+ GR F I KPLLSLFH
Sbjct: 79 VFGRDFDIITDHKPLLSLFH 98
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 364 ISGRSFRAIVAEKPLLSLFH 423
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_53612| Best HMM Match : SRCR (HMM E-Value=0)
Length = 409
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 384 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 274
A + T ATP SP R +++ SS SP P P
Sbjct: 366 ASSASTPATPDSSPKRKRTRQANSASSSQPSSPHPAP 402
>SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4)
Length = 300
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 364 ISGRSFRAIVAEKPLLSLFH 423
+ GR F I KPLLSLFH
Sbjct: 259 VFGRDFDIITDHKPLLSLFH 278
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 364 ISGRSFRAIVAEKPLLSLFH 423
+ GR F I KPLLSLFH
Sbjct: 568 VFGRDFDIITDHKPLLSLFH 587
>SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 429
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 364 ISGRSFRAIVAEKPLLSLFH 423
+ GR F I KPLLSLFH
Sbjct: 347 VFGRDFDIITDHKPLLSLFH 366
>SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 364 ISGRSFRAIVAEKPLLSLFH 423
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 364 ISGRSFRAIVAEKPLLSLFH 423
+ GR F I KPLLSLFH
Sbjct: 773 VFGRDFDIITDHKPLLSLFH 792
>SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6)
Length = 309
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 364 ISGRSFRAIVAEKPLLSLFH 423
+ GR F I KPLLSLFH
Sbjct: 167 VFGRDFDIITDHKPLLSLFH 186
>SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 364 ISGRSFRAIVAEKPLLSLFH 423
+ GR F I KPLLSLFH
Sbjct: 608 VFGRDFDIITDHKPLLSLFH 627
>SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8)
Length = 391
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 364 ISGRSFRAIVAEKPLLSLFH 423
+ GR F I KPLLSLFH
Sbjct: 241 VFGRDFDIITDHKPLLSLFH 260
>SB_36043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 502 LCTLGTKHGAPADIIDGAPLPPN 434
LCT T HG P + P PPN
Sbjct: 4 LCTQATLHGGPLYCLPWVPEPPN 26
>SB_52459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 541 PRDPVRGHCQAGSLTRAVHLSRITQCP 621
P V+ HC A +TR VH I + P
Sbjct: 185 PMGQVKLHCTANGITRKVHFQIIKEAP 211
>SB_46457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 541 PRDPVRGHCQAGSLTRAVHLSRITQCP 621
P V+ HC A +TR VH I + P
Sbjct: 213 PMGQVKLHCTANGITRKVHFQIIKEAP 239
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 588 PSQTPRLAVSSNRITREF*TATSVSATHHSARLERNTVR 472
PS+ P L + S RI TA+SV +H+A R +R
Sbjct: 2994 PSRLPALGMRSRRIRNNQITASSVWDRYHAANRARLHIR 3032
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 588 PSQTPRLAVSSNRITREF*TATSVSATHHSARLERNTVR 472
PS+ P L + S RI TA+SV +H+A R +R
Sbjct: 3566 PSRLPALGMRSRRIRNNQITASSVWDRYHAANRARLHIR 3604
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,517,356
Number of Sequences: 59808
Number of extensions: 399312
Number of successful extensions: 1029
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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