Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1187
(623 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi... 30 1.4
At5g24350.1 68418.m02870 expressed protein weak similarity to ne... 29 3.3
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 29 3.3
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 29 3.3
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 28 4.4
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co... 28 4.4
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 28 5.8
At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase... 28 5.8
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 28 5.8
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 7.7
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 7.7
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 7.7
>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
to receptor kinase GI:498278 from [Petunia
integrifolia]; contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 652
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/86 (26%), Positives = 37/86 (43%)
Frame = -3
Query: 330 LESSSTGSSFPADSPKPVPLAVVSLVVDRDSGNLVNPFMRVTN*MTRHLATLRES*LLPP 151
L ++ FP L V L +R SG + + +R++ T ++ S +PP
Sbjct: 116 LNDNNFSGEFPESLTSLHRLKTVVLSRNRFSGKIPSSLLRLSRLYTFYVQDNLFSGSIPP 175
Query: 150 FTRACLNFFTLTFRALGRNHIASTPA 73
+A L FF ++ L HI T A
Sbjct: 176 LNQATLRFFNVSNNQLS-GHIPPTQA 200
>At5g24350.1 68418.m02870 expressed protein weak similarity to
neuroblastoma-amplified protein [Homo sapiens] GI:4337460
Length = 2376
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -2
Query: 457 DGAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQCQTRVKLNRVFFPR*FSQA 281
+G P ++ +E + +V++ IS+ CY S S C KL+R F +QA
Sbjct: 2200 EGIPELSSQSHHEVLLLVIYSGTLSTIISNACYGSVFSFLCYLIGKLSREFQEERITQA 2258
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -2
Query: 166 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 56
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -2
Query: 166 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 56
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 493 LGTKHGAPADIIDGAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 347
LG +H PA +I+ P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1611
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 390 DRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLVVDRDSGNL 229
DR K S + L + RLES+ A P P + +++ D DSG +
Sbjct: 862 DRVKSSNSDTEDLQRFVDQRLESNENSDGVVASPPLPTKVIKENILDDSDSGEV 915
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 363 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 259
A+ + SP+N+ L S SS +D P PL +VS
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVS 139
>At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative (DEF) (CLA1) identical
to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate
synthase, chloroplast precursor (EC 4.1.3.37)
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF
(deficient in photosynthesis) protein [Arabidopsis
thaliana] GI:1399261
Length = 717
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 541 GVLNGDERFRHSPLCTLGTKHGAPADIIDGAPLPPNRVSNETMKVV 404
G+L+G ++R L HGAPAD + A L P+ ++ + ++
Sbjct: 664 GLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLI 709
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 178 GSQMPRHLISDAHEWINEIPTVPIYY*RNHSQGNGLGRISGER 306
G +P + +SD + INE+ P + + NGL + G+R
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKR 112
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 448 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 338
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 448 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 338
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 375 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 268
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,333,100
Number of Sequences: 28952
Number of extensions: 268373
Number of successful extensions: 733
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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