Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1185
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46750.1 68418.m05759 human Rev interacting-like family prote...    33   0.18 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   0.98 
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   3.0  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   3.0  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    28   4.0  
At2g26600.2 68415.m03192 glycosyl hydrolase family 17 protein          28   4.0  
At2g26600.1 68415.m03191 glycosyl hydrolase family 17 protein          28   4.0  
At4g38560.1 68417.m05459 expressed protein                             28   5.2  

>At5g46750.1 68418.m05759 human Rev interacting-like family protein
           / hRIP family protein contains Pfam profile PF01412:
           Putative GTP-ase activating protein for Arf
          Length = 402

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 364 ESGFDSGEGA*ETATTSKEG--SRRANYPLPAREVVTKNNDTGLLRGLVIE*VHFKYFNE 537
           +SG   G GA +  T SK+    ++   P+P     +  NDT            F+YF++
Sbjct: 189 KSGKTGGLGARKLTTKSKDNLYEQKPEEPVPVIPAASPTNDTSAAGSSFAS--RFEYFDD 246

Query: 538 EQLEGKSG 561
           EQ  G+SG
Sbjct: 247 EQSGGQSG 254


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 249 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 154
           DS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 431 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 330
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 422 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 315
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 566 LAPDLPSNCSSLKYLKCTHS 507
           L+ DL +NCSSL+YL  +H+
Sbjct: 164 LSDDLFNNCSSLRYLSLSHN 183


>At2g26600.2 68415.m03192 glycosyl hydrolase family 17 protein
          Length = 294

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = +1

Query: 364 ESGFDSGEGA*ETATTSKEGSRRANYPLPAREVVTKNNDTGLLRGLVIE*VHFKYFNEEQ 543
           E+G+ S   + E A T  E +R  NY L  R+ + K   T L    V++   F  FNE  
Sbjct: 178 ETGWASKGDSDEPAATP-ENARTYNYNL--RKRLAKKKGTPLRPKTVLKAYIFALFNENS 234

Query: 544 LEGKSGASSRG 576
             GKS  +  G
Sbjct: 235 KPGKSSETHFG 245


>At2g26600.1 68415.m03191 glycosyl hydrolase family 17 protein
          Length = 388

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = +1

Query: 364 ESGFDSGEGA*ETATTSKEGSRRANYPLPAREVVTKNNDTGLLRGLVIE*VHFKYFNEEQ 543
           E+G+ S   + E A T  E +R  NY L  R+ + K   T L    V++   F  FNE  
Sbjct: 272 ETGWASKGDSDEPAATP-ENARTYNYNL--RKRLAKKKGTPLRPKTVLKAYIFALFNENS 328

Query: 544 LEGKSGASSRG 576
             GKS  +  G
Sbjct: 329 KPGKSSETHFG 339


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 1   SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 144
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,249,909
Number of Sequences: 28952
Number of extensions: 278411
Number of successful extensions: 694
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)