Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1184
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80789-3|CAB02553.1|  364|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AY008129-1|AAG32082.1|  364|Caenorhabditis elegans heterotrimeri...    28   1.5  
Z92784-5|CAB07196.3|  554|Caenorhabditis elegans Hypothetical pr...    27   2.7  
AF025465-8|AAO38628.1|  233|Caenorhabditis elegans Hypothetical ...    26   8.1  

>Z80789-3|CAB02553.1|  364|Caenorhabditis elegans Hypothetical
           protein F48C11.1 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 231 LSTYGFNYIYLNFRQILFKNIDIGWREIYRGKGI 130
           +ST G N +  N++++ FK +D+G +   R K I
Sbjct: 190 ISTTGINELAFNYKKMDFKMVDVGGQRSERRKWI 223


>AY008129-1|AAG32082.1|  364|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 231 LSTYGFNYIYLNFRQILFKNIDIGWREIYRGKGI 130
           +ST G N +  N++++ FK +D+G +   R K I
Sbjct: 190 ISTTGINELAFNYKKMDFKMVDVGGQRSERRKWI 223


>Z92784-5|CAB07196.3|  554|Caenorhabditis elegans Hypothetical
           protein F31C3.6a protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = -1

Query: 198 NFRQILFKNIDIGWREIYRGKGIFNI 121
           + ++I+++N++  WR I + +GIF +
Sbjct: 157 SIKKIMYENLNTKWRSIAKERGIFQL 182


>AF025465-8|AAO38628.1|  233|Caenorhabditis elegans Hypothetical
           protein K02E7.4 protein.
          Length = 233

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 207 IYLNFRQILFKNIDIGWREIYRGKGIFNILKNYSVFYNIYQINNF 73
           +++N    +FK  ++  R +     +F +LKN  +FY + QI  F
Sbjct: 148 LFMNSTNFMFKISNL--RSLNPDFQVFFVLKNLKMFYFLSQIQGF 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,598,708
Number of Sequences: 27780
Number of extensions: 47755
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)