Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1183
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0256 - 42328795-42329172,42330245-42330379,42330783-423310...    32   0.44 
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    28   7.2  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    28   9.5  

>01_07_0256 -
           42328795-42329172,42330245-42330379,42330783-42331033,
           42331290-42331341,42331619-42331647,42331812-42332105,
           42332229-42332378,42333915-42334405,42334513-42334613,
           42334941-42335037,42335882-42335950,42336036-42336122,
           42336423-42336494,42336795-42336863,42337784-42337858,
           42338230-42338301,42338378-42338449,42338533-42338676,
           42339106-42339177,42339294-42339365,42339804-42339954,
           42340204-42340297
          Length = 1008

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 435 LLNKINQKSLL-LFQICPQNDKQVIVIIIRSYFGLDLTKNQAQPN 566
           LL++++ ++L+ L   C + D+QV+   IR YFG  +   +  PN
Sbjct: 702 LLSRLHHRNLVSLLGYCDEEDEQVVPAAIRFYFGEQMLVYEFMPN 746


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 171  SKHSFYSRNIYKFWDILNKAHQASIS-YD*NVTN 73
            S HS Y   +Y FW   +K H AS++ Y   VTN
Sbjct: 3213 SAHSAYGDRVYSFWP-RSKQHPASLTGYGSTVTN 3245


>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
            27353739-27354606,27354784-27355957
          Length = 1790

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 598  FFFQDHIYVSTTVRLPFTLHCFLFR 672
            FFF+D + +   +  P TLHC   R
Sbjct: 1748 FFFKDGVLIPPDITAPTTLHCSYMR 1772


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,650
Number of Sequences: 37544
Number of extensions: 240882
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)