Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1183
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      29   3.1  
SB_27410| Best HMM Match : Peptidase_A24 (HMM E-Value=9.3)             29   5.5  
SB_19630| Best HMM Match : Peptidase_A24 (HMM E-Value=9.3)             28   7.3  
SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_24036| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 389 ISCLFCPKYCYLCKIVYYRCNV 324
           ++C  C   CY C++V Y C V
Sbjct: 169 VACCSCRVVCYSCRVVCYSCRV 190



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 389 ISCLFCPKYCYLCKIVYYRCNV 324
           ++C  C   CY C++V Y C V
Sbjct: 211 VACCSCRVVCYSCRVVCYSCRV 232



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 398 VTIISCLFCPKYCYLCKIVYYRCNVIF 318
           V ++ C  C   C  C++V Y C V+F
Sbjct: 117 VLLMPCCSCRIACCSCRVVCYSCRVVF 143



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 389 ISCLFCPKYCYLCKIVYYRCNV 324
           I+C  C   CY C++V+  C V
Sbjct: 127 IACCSCRVVCYSCRVVFCSCRV 148



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 410 ILYDVTIISCLFCPKYCYLCKIVYYRCNVIF 318
           + Y   ++ C  C   C  C++V Y C V+F
Sbjct: 177 VCYSCRVV-CYSCRVACCSCRVVCYSCRVVF 206



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 389 ISCLFCPKYCYLCKIVYYRCNV 324
           ++C  C   CY C++V+  C V
Sbjct: 190 VACCSCRVVCYSCRVVFCSCRV 211


>SB_27410| Best HMM Match : Peptidase_A24 (HMM E-Value=9.3)
          Length = 156

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 398 VTIISCLFCPKYCYLCKIVYYRCN 327
           + +  CL+C +YC++  +V   CN
Sbjct: 25  LVLARCLYCHRYCHIIFVVICHCN 48


>SB_19630| Best HMM Match : Peptidase_A24 (HMM E-Value=9.3)
          Length = 128

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 383 CLFCPKYCYLCKIVYYRCN 327
           CL+C +YC++  +V   CN
Sbjct: 2   CLYCHRYCHIIFVVICHCN 20


>SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1326

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -3

Query: 385 VVYFVQSIVIYVKLFITGAMLSFNADNNL*IMFVPTLSK*VDTYIIYFDSFVFNQDTE 212
           VV  V ++V+ V  F+ G         +  ++ V TL   V+T ++  D+FV   DT+
Sbjct: 560 VVTGVDTLVVGVDTFVVGVDTDVVTGVDTLVVGVDTLVVGVETLVVGVDTFVVGVDTD 617



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -3

Query: 385 VVYFVQSIVIYVKLFITGAMLSFNADNNL*IMFVPTLSK*VDTYIIYFDSFVFNQDTE 212
           VV  V ++V+ V  F+ G         +  ++ V TL   V+T ++  D+FV   DT+
Sbjct: 618 VVTGVDTLVVGVDTFVVGVDTDVVTGVDTLVVGVDTLVVGVETLVVGVDTFVVGVDTD 675


>SB_24036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 385  VVYFVQSIVIYVKLFITGA-MLSFNADNNL*IMFVPTLSK*VDTYIIYFDSFVFNQDTE 212
            VV  V+++V+ V  F+ G   L    D ++ +  V TL   VDT ++  D+ V   DT+
Sbjct: 2022 VVTGVETLVVGVDTFVVGVDTLVVGVDTDV-VTGVDTLVVGVDTLVVGVDTLVVGVDTD 2079



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 385  VVYFVQSIVIYVKLFITGA-MLSFNADNNL*IMFVPTLSK*VDTYIIYFDSFVFNQDTE 212
            VV  V+++V+ V  F+ G   L    D ++ +  V TL   VDT ++  D+ V   DT+
Sbjct: 2147 VVTGVETLVVGVDTFVVGVDTLVVGVDTDV-VTGVDTLVVGVDTLVVGVDTLVVGVDTD 2204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,256,658
Number of Sequences: 59808
Number of extensions: 336016
Number of successful extensions: 582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)