Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1183
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   4.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 228  KTKLSKYII*VSTYFDNVGTNMIHKLLSALKDNIAPVI 341
            +TK SK II  +  F  V TN I   L+A  D   P+I
Sbjct: 1455 RTKGSKPIIPEAARFIEVATNSITLHLNAWSDGGCPMI 1492


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 158 NECFDKTGENL*KFTVKPLRILIKNKTIKIY 250
           N C D T  N  K + K L+  I N  +KI+
Sbjct: 101 NNCKDITESNSCKKSSKLLQCFIDNNLMKIF 131


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 623 YLQPFDCHSPFIAFYLDRVNFINQL 697
           YL+ FD   PF   Y   + + N L
Sbjct: 281 YLEEFDWQKPFYPGYYPTMTYSNGL 305


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 237 LSKYII*VSTYFDNVGTNMIHK-LLSA 314
           L  Y+I  STY + V T  + K +LSA
Sbjct: 290 LQTYLINASTYLNEVHTASLRKFILSA 316


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 237 LSKYII*VSTYFDNVGTNMIHK-LLSA 314
           L  Y+I  STY + V T  + K +LSA
Sbjct: 328 LQTYLINASTYLNEVHTASLRKFILSA 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,351
Number of Sequences: 438
Number of extensions: 3790
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)