Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1182
         (722 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VDE7 Cluster: Putative uncharacterized protein; n=1; ...    37   0.44 
UniRef50_Q8TSL1 Cluster: Proteophosphoglycan; n=2; cellular orga...    37   0.44 
UniRef50_Q7RJ09 Cluster: Putative uncharacterized protein PY0345...    37   0.58 
UniRef50_Q54J60 Cluster: Putative uncharacterized protein; n=1; ...    36   0.77 
UniRef50_Q54CZ0 Cluster: Transcription initiation factor TFIID s...    36   1.0  
UniRef50_Q8IEN1 Cluster: Putative uncharacterized protein MAL13P...    35   2.3  
UniRef50_A3U609 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q9HEX4 Cluster: Putative sucrose carrier Sca1; n=1; Pne...    34   4.1  
UniRef50_Q0UTP1 Cluster: Putative uncharacterized protein; n=2; ...    34   4.1  
UniRef50_Q4GYE3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q7RFM3 Cluster: Putative uncharacterized protein PY0468...    33   7.1  
UniRef50_A0BTG6 Cluster: Chromosome undetermined scaffold_127, w...    33   7.1  
UniRef50_A5UK58 Cluster: Putative uncharacterized protein; n=1; ...    33   7.1  
UniRef50_Q4U8N7 Cluster: Hypothetical product; n=4; Theileria|Re...    33   9.4  
UniRef50_O47582 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    33   9.4  
UniRef50_Q04398 Cluster: Stationary phase protein 3; n=2; Saccha...    33   9.4  

>UniRef50_A4VDE7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 181

 Score = 37.1 bits (82), Expect = 0.44
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +2

Query: 188 CHFFAFCVNNYRFRYFIQTYFVSDGFI-QFLFYISHFYYYNLRFSLPSNHVS---HFNYI 355
           C+++ +  N+Y   YF   YFV   +   + +Y  + YYY  R+   S HV+   +FN+ 
Sbjct: 85  CYYYYYYFNDYHLNYFNLLYFVKYYYYHDYDYYDYYCYYYEYRYC--SEHVTTVVYFNFN 142

Query: 356 DFIFFV 373
           +F  F+
Sbjct: 143 EFPTFL 148


>UniRef50_Q8TSL1 Cluster: Proteophosphoglycan; n=2; cellular
           organisms|Rep: Proteophosphoglycan - Methanosarcina
           acetivorans
          Length = 146

 Score = 37.1 bits (82), Expect = 0.44
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
 Frame = +2

Query: 179 FINCHFFAFCVNNYRFRY-FIQTYFVSDGFIQFLFYISHF---YYYNLRFSLPSNHVSHF 346
           F +  F +F V+N+   Y F  ++FVS+ F+ + F++S+F   Y++   F +    VSHF
Sbjct: 14  FFSNFFSSFFVSNFFVSYFFFSSFFVSNFFVSY-FFVSYFFVSYFFVSHFFVGYFFVSHF 72

Query: 347 NYIDFIFFVS 376
            ++ + FFVS
Sbjct: 73  -FVGY-FFVS 80


>UniRef50_Q7RJ09 Cluster: Putative uncharacterized protein PY03457;
            n=1; Plasmodium yoelii yoelii|Rep: Putative
            uncharacterized protein PY03457 - Plasmodium yoelii
            yoelii
          Length = 1249

 Score = 36.7 bits (81), Expect = 0.58
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
 Frame = +2

Query: 152  FKKEKKTVVFINCHFFAFCVN-NYRFRYFI--QTYFVSDGFIQFLFYISHFYYYNLRFSL 322
            F K +  ++ I  + + + +N N    YF+  Q    +D FIQ ++   +F  +  +FS 
Sbjct: 1078 FNKIRSEMLLIITYLYDYIININIYKNYFLCFQNMLKTDKFIQLIYIHKYFIQHIFKFSF 1137

Query: 323  PSNHVSHFNYIDF-IFFVSD*AS--VTSKSIL*SFSRDTDH 436
             ++H   F+ I F I    D     VTS  +L +F+ D +H
Sbjct: 1138 LASHFFFFSKIIFNIINTIDQFKKLVTSLQLLDNFNSDQEH 1178


>UniRef50_Q54J60 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 776

 Score = 36.3 bits (80), Expect = 0.77
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +2

Query: 155 KKEKKTVVFINCHFFAFCVNNYRFRYFIQTYFVSDGFIQFLFYISHFYYYNLRFSLPSNH 334
           K++KK+  F    FF+ C +   F +F+ T  + + +I  +  I ++Y Y + FS   N 
Sbjct: 8   KRKKKSFFFF---FFSLCFSLCFFFFFLNTLMIINNYI--ILNILNYYIYIISFSRNKNE 62

Query: 335 VSHFNYIDFIFFVS 376
            S+   I FI  +S
Sbjct: 63  KSNREIIKFIKVIS 76


>UniRef50_Q54CZ0 Cluster: Transcription initiation factor TFIID
            subunit; n=3; Eukaryota|Rep: Transcription initiation
            factor TFIID subunit - Dictyostelium discoideum AX4
          Length = 3004

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +2

Query: 173  VVFINCHFFAFCVNNYRFRYFIQTYFVSDGFIQFLFYISHFYYYNLRFSLPSNHVSHFNY 352
            ++++    F F V+ Y F +F   +F    FI F+F+  +FY+  + F +     S FN+
Sbjct: 858  LIYLFIFGFWFLVDFYFFYFFFFYFFFFIYFIFFIFFFFYFYFIFIFFFI----FSFFNF 913

Query: 353  IDFIFF 370
              F FF
Sbjct: 914  FFFFFF 919


>UniRef50_Q8IEN1 Cluster: Putative uncharacterized protein MAL13P1.39;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL13P1.39 - Plasmodium
            falciparum (isolate 3D7)
          Length = 6088

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -3

Query: 525  NLTNIC*SADPSPKPSEHGRFITMLFISFS*SVSLENDYNILFDV 391
            N+ NIC +     K   H +FI MLF   S  +     YNI+FDV
Sbjct: 1728 NIINICDNKIRKKKKKNHDKFILMLFYYHSNMLKDNKLYNIIFDV 1772


>UniRef50_A3U609 Cluster: Putative uncharacterized protein; n=1;
           Croceibacter atlanticus HTCC2559|Rep: Putative
           uncharacterized protein - Croceibacter atlanticus
           HTCC2559
          Length = 408

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
 Frame = +2

Query: 68  KFFDGFFNICAVLILLVFIQY**L*GVRFKKEKKTV-VFINCHFFAFCVN-------NYR 223
           KFF    N C  ++ L+ + Y       FKK ++T  + +   +FAF VN       N +
Sbjct: 53  KFF--LINACVSILFLISLLYTENLDTGFKKIEQTASLLVFPWYFAFLVNSKYKLYGNSK 110

Query: 224 FRYFIQTYFVSDGFIQFLFYISHFYYYNLRFSLPSNHVSH 343
             Y +   F+    +  L+Y  +FY+    F+    H SH
Sbjct: 111 VLYKLLYAFILSAILLNLYYFLYFYFTEFTFADVLYHYSH 150


>UniRef50_Q9HEX4 Cluster: Putative sucrose carrier Sca1; n=1;
           Pneumocystis carinii|Rep: Putative sucrose carrier Sca1
           - Pneumocystis carinii
          Length = 566

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 215 NYRFRYFIQTYFVSDGFIQFLFYISHFYYYNLRFSLPSNHVSHFNYIDFIFFVS 376
           ++ F  F   +F+ + F+ F+F++  + +Y   F    NH S  N+  F  FVS
Sbjct: 349 SFAFCAFFYYFFIRNIFLSFIFFMDFWSFY-FYFMHAFNHTSKINHFFFPLFVS 401


>UniRef50_Q0UTP1 Cluster: Putative uncharacterized protein; n=2;
           Eukaryota|Rep: Putative uncharacterized protein -
           Phaeosphaeria nodorum (Septoria nodorum)
          Length = 544

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 182 INCHFFAFCVNNYRFRYFIQTYFVSDGFIQFLFYISHFYYY 304
           I+ H++ FC   Y + Y+   Y+    +  + +Y  ++YYY
Sbjct: 47  IDYHYYYFCYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 87


>UniRef50_Q4GYE3 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 128

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 263 FIQFLFYISHFYYYNLRFSLPSNHVSHFNYIDFIFF 370
           F+ F+FY S F YY+  F+       +F++  F+FF
Sbjct: 46  FLSFIFYFSVFAYYSFNFNFNFVVRPYFHWFSFLFF 81


>UniRef50_Q7RFM3 Cluster: Putative uncharacterized protein PY04683;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY04683 - Plasmodium yoelii yoelii
          Length = 840

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 182 INCHFFAFCVNNYRFRYFIQTYFVSDGF-IQFLF--YISHFYYYNL 310
           INC++      NY + Y  Q + + D F I FL+  YIS+ +YY+L
Sbjct: 484 INCNYNKDYNLNYEYVYISQLFNIYDDFDITFLYPLYISYVFYYHL 529


>UniRef50_A0BTG6 Cluster: Chromosome undetermined scaffold_127,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_127,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1010

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 224 FRYFIQTYFVSDGFIQFLFYISHFYYYNLRFSLPSNHVSHFNYIDFIFFVS 376
           +R FI    +S  F+ F   + HF YYN   S P        Y+ FIFF++
Sbjct: 198 YRKFILAIVLSIIFLVFCSIMPHFDYYNPFLSYPHEESIFSIYLVFIFFMT 248


>UniRef50_A5UK58 Cluster: Putative uncharacterized protein; n=1;
           Methanobrevibacter smithii ATCC 35061|Rep: Putative
           uncharacterized protein - Methanobrevibacter smithii
           (strain PS / ATCC 35061 / DSM 861)
          Length = 400

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 317 SLPSNHVSHFNYIDFIFFVSD*ASVTSKSIL*SFSRDTDHEN 442
           S+ + +V  FNY   I F  + A +TS+SIL +  RD   EN
Sbjct: 30  SVETEYVELFNYTQTILFELEKAEITSESILENLKRDVGVEN 71


>UniRef50_Q4U8N7 Cluster: Hypothetical product; n=4; Theileria|Rep:
           Hypothetical product - Theileria annulata
          Length = 1022

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 176 VFINCHFFAFCVNNYRFRYFIQTYFVSDGFIQFLFYISHFYYYNL 310
           +F+   FF   ++NYRF YF+   F +  FI F   + +++ Y +
Sbjct: 668 LFLLLRFFYVKISNYRFGYFMLWAFNTGYFIFFAIQLIYYFSYEM 712


>UniRef50_O47582 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=29; Onchocercidae|Rep: NADH-ubiquinone oxidoreductase
           chain 5 - Onchocerca volvulus
          Length = 531

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +2

Query: 146 VRFKKEKKTVVFINCHFFAFCVNNYRFRYFIQTY---FVSDGFIQFLFYISHFYYYNLRF 316
           V F + +  VV+    FF +C   Y FRYF+  +   F  D +  F++ I   ++Y   F
Sbjct: 429 VAFNRFEFLVVYFYL-FFVYCFCGYFFRYFVVEFKGKFFMDHYACFIYKIFPSFFYFDVF 487

Query: 317 SLPSNH--VSHFNYIDFIFF 370
            +  N+     F    F FF
Sbjct: 488 IMGFNYFFFGLFRLFSFFFF 507


>UniRef50_Q04398 Cluster: Stationary phase protein 3; n=2;
           Saccharomyces cerevisiae|Rep: Stationary phase protein 3
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 127

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +2

Query: 146 VRFKKEKKTVVFINCHFFAFCVNNYRFRYFIQTYFVSDGFIQFLFYISHFYYYNLRFSLP 325
           + F KEK T+    CH+F    + + F +     F+   F+ F + I  + + +L    P
Sbjct: 10  INFLKEKTTI----CHYFVNIFSLFLFLFVFVFVFI---FVYFFYVILFYRFCSLFTYFP 62

Query: 326 SNHVSHFNYIDFIFF 370
           +N + ++  I  IFF
Sbjct: 63  ANSIWYYLSIINIFF 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,964,212
Number of Sequences: 1657284
Number of extensions: 10230632
Number of successful extensions: 23861
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 22458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23625
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)