Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1182
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    29   0.67 
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    27   2.1  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   2.7  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   6.3  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   8.3  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    25   8.3  

>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 146 VRFKKEKKTVVFINCHFFAFCVNNYRFRYFIQTYFVSDG 262
           +RF K  +  ++I     A+C  NY +R FIQ Y  S+G
Sbjct: 3   IRFLKRLRAPLYIQN---AYCSKNYFYRSFIQYYSPSNG 38


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 275 LFYISHFYYYNLRFSLPSNHVSHFNYIDFIFF 370
           L Y++  Y    + SLP +H  ++  I ++FF
Sbjct: 75  LIYLADKYDTERKISLPRDHPEYYKVIQYLFF 106


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 263 FIQFLFYISHFYYYNLRFSL-PSNHVSHFNYIDFIFFVSD 379
           F + + Y+ HF    L  +  PSN V++ NY + + F+ D
Sbjct: 505 FAKLVAYLDHFGDEILSINFDPSNAVTYINYANKVAFIRD 544


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 185 NCHFFAFCVNNYRFRYFIQTYFVSDGFIQFLFYISHFYYYNL 310
           +C +   CV     R F+   F     I   FY++ +Y  N+
Sbjct: 429 HCPWTGNCVGARNHRTFLLFVFTLSTLIPIYFYVAFYYLQNI 470


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 230 YFIQTYFVSDGFIQFLFYISHFYYYNLRFSLPSNHVSHFNYIDFIF 367
           +F+  + V+   +QF  Y S+F++     +L   H  +F+ +D  F
Sbjct: 9   WFLAAFIVNADNVQFEDYESNFFFKEHLGTLSPYHEPYFDGLDSAF 54


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 183 IKTTVFFSFLNLTPYNY*YWMN 118
           IKT VF SF N  P  +  WM+
Sbjct: 129 IKTEVFKSFFNSMPKEFEVWMS 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,547
Number of Sequences: 5004
Number of extensions: 48869
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)