Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1182
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0652 - 18424489-18424525,18424639-18424702,18424796-184248...    34   0.099

>04_03_0652 -
           18424489-18424525,18424639-18424702,18424796-18424869,
           18425809-18425924,18426078-18426343,18427659-18427749
          Length = 215

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +2

Query: 176 VFINCHFFAFCVNNYRFRYFIQTYFVS-----DGFIQFLFYISHFYYY 304
           VF    + A  + N+ +RYF + ++V       GF+Q L Y   FYYY
Sbjct: 154 VFFLGAYRALYILNWAYRYFTEPHYVHWITWISGFVQTLLYADFFYYY 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,721,309
Number of Sequences: 37544
Number of extensions: 234405
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)