Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1182
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53058| Best HMM Match : Y_Y_Y (HMM E-Value=2.2)                     28   6.7  
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   8.8  
SB_28689| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_53058| Best HMM Match : Y_Y_Y (HMM E-Value=2.2)
          Length = 229

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +2

Query: 200 AFCVNNYRFRYFIQTYFVSDGFIQFLFYISHFYYY 304
           AF  N + F YF    F  DGF  F FY   FY+Y
Sbjct: 143 AFYFNGFAF-YFYGVAFYFDGF-TFYFYGFAFYFY 175


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/71 (21%), Positives = 30/71 (42%)
 Frame = +2

Query: 164  KKTVVFINCHFFAFCVNNYRFRYFIQTYFVSDGFIQFLFYISHFYYYNLRFSLPSNHVSH 343
            K T VF+N H  A     + + Y    +FVS  F++   +              +  ++H
Sbjct: 1331 KDTSVFVNFHALAASDQVFGYVYAFVAFFVSLKFLRLFRFNKRMSLLATTLKCSAKELAH 1390

Query: 344  FNYIDFIFFVS 376
            F+ +  + F++
Sbjct: 1391 FSIVFGLVFMA 1401


>SB_28689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 383 ASVTSKSIL*SFSRDTDHENDIKSIVMKRPCSLGL--GDGSALQQIFVR 523
           AS   K IL   S   D  N+I ++ MKR   LG    DGS L   F+R
Sbjct: 235 ASGDYKGILAFLSATFDSVNEINAVFMKREDCLGPEDEDGSGLDYDFIR 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,570,529
Number of Sequences: 59808
Number of extensions: 327159
Number of successful extensions: 801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)