Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1182
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical pr...    30   1.5  

>Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical
           protein Y6G8.4 protein.
          Length = 328

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 161 EKKTVVFINCHFFAFCVNNYRFRYFIQTYFVSDGFIQFLFYISHF--YYYNLRFSLPSNH 334
           EK  +V I    F   V   +F  FI T  V    I FL  I +   +++ LRFSL  N 
Sbjct: 94  EKFHIVLIIFLLFGGAVVTIQFLAFIVTLQVFHVLI-FLIAIQNLLRFFFPLRFSLLKNS 152

Query: 335 VSHFNYIDFIFFVS 376
              +    +IFFVS
Sbjct: 153 TDRYVKQFYIFFVS 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,320,485
Number of Sequences: 27780
Number of extensions: 266966
Number of successful extensions: 702
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)