Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1182
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +2

Query: 68  KFFDGFFNICAVLILLVFIQY 130
           K  D F ++C V + +  ++Y
Sbjct: 305 KAVDAFMSVCTVFVFMALMEY 325


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 448 KEHCNETPVFAGLGRRIGASTDIRKV 525
           ++HCN+T V   +   +GA++ +  +
Sbjct: 200 EDHCNKTAVRKVISGVVGAASSVTSI 225


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 320 LPSNHVSHFNYIDFI 364
           LP NH+ +  Y+D I
Sbjct: 361 LPENHLKNAKYLDVI 375


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 320 LPSNHVSHFNYIDFI 364
           LP NH+ +  Y+D I
Sbjct: 361 LPENHLKNAKYLDVI 375


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 320 LPSNHVSHFNYIDFI 364
           LP NH+ +  Y+D I
Sbjct: 361 LPENHLKNAKYLDVI 375


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 703 IESMLKRHTHTDKYFICTVFIHGSFSCTGSLHGLMNVVT 587
           +E  L R  H DKY     F+ G F+      G++  +T
Sbjct: 206 LEHTLDRF-HNDKYSNVPYFLFGDFNFRTDTAGVIKKLT 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,665
Number of Sequences: 438
Number of extensions: 3676
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)