Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1182
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25040.1 68416.m03129 ER lumen protein retaining receptor, pu...    33   0.19 
At2g24170.1 68415.m02888 endomembrane protein 70, putative simil...    29   2.4  
At1g29330.1 68414.m03585 ER lumen protein retaining receptor (ER...    29   3.1  
At2g15240.1 68415.m01738 UNC-50 family protein contains Pfam pro...    27   9.5  

>At3g25040.1 68416.m03129 ER lumen protein retaining receptor,
           putative / HDEL receptor, putative similar to SP|P35402
           ER lumen protein retaining receptor (HDEL receptor)
           {Arabidopsis thaliana}; contains Pfam profile PF00810:
           ER lumen protein retaining receptor
          Length = 215

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 176 VFINCHFFAFCVNNYRFRYFIQTYFVS-----DGFIQFLFYISHFYYYNL 310
           +F+   +    + N+ +RYF + +FV       GF+Q L Y   FYYY L
Sbjct: 154 IFLLGGYRGLYILNWIYRYFTEPHFVHWITWIAGFVQTLLYADFFYYYFL 203


>At2g24170.1 68415.m02888 endomembrane protein 70, putative similar
           to  MURA transposase of maize Mutator transposon
          Length = 637

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +2

Query: 194 FFAFCVNNYRFRYFIQTYFVSDGFIQFLFYISHFYYY-NLRFSLPSNHVSHFNY---IDF 361
           +F  C  +Y++ +  ++Y  S     +LF  + FY+Y  L  +   + V +F Y   + +
Sbjct: 552 YFQLCSEDYQWWW--RSYLTSGSSAVYLFLYAVFYFYTKLEITKLVSAVLYFGYMLIVSY 609

Query: 362 IFFV 373
           +FFV
Sbjct: 610 VFFV 613


>At1g29330.1 68414.m03585 ER lumen protein retaining receptor (ERD2)
           / HDEL receptor identical to SP:P35402 ER lumen protein
           retaining receptor (HDEL receptor) {Arabidopsis
           thaliana}
          Length = 215

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +2

Query: 173 VVFINCHFFAFCVNNYRFRYFIQTYFVS-----DGFIQFLFYISHFYYY 304
           VVF+  +   + +N + +RYF + +F        G +Q   Y   FYYY
Sbjct: 154 VVFLGAYRGLYIIN-WIYRYFTEDHFTRWIACVSGLVQTALYADFFYYY 201


>At2g15240.1 68415.m01738 UNC-50 family protein contains Pfam
           profile PF05216: UNC-50 family; contains 5 transmembrane
           domains; similar to inner nuclear membrane RNA-binding
           protein unc-50 related protein (GI:2735550) [Rattus
           norvegicus]
          Length = 252

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = +2

Query: 182 INCH-FFAFCVNNYRFRYFIQTYFVSDGFI-----QFLFYISHFYYYNLRF 316
           ++C+ FF   V  Y   YF+    ++ GFI       LF +   YY+ L F
Sbjct: 153 VHCNSFFPMFVLLYVVHYFLSPLLIAHGFIPLLLSNLLFMVGASYYHYLNF 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,808,644
Number of Sequences: 28952
Number of extensions: 219020
Number of successful extensions: 444
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)