Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1180
         (545 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8D2T7 Cluster: RecD protein; n=1; Wigglesworthia gloss...    34   1.9  
UniRef50_Q859W7 Cluster: Protein ycf2; n=1; Anthoceros formosae|...    33   3.3  
UniRef50_A7TPY7 Cluster: Putative uncharacterized protein; n=1; ...    33   4.3  
UniRef50_Q7R934 Cluster: Putative uncharacterized protein PY0703...    32   7.5  
UniRef50_Q4MZG7 Cluster: Putative uncharacterized protein; n=1; ...    32   7.5  
UniRef50_O58590 Cluster: Putative uncharacterized protein PH0860...    32   7.5  

>UniRef50_Q8D2T7 Cluster: RecD protein; n=1; Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis|Rep:
           RecD protein - Wigglesworthia glossinidia brevipalpis
          Length = 334

 Score = 34.3 bits (75), Expect = 1.9
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
 Frame = +1

Query: 109 IINDILALFNTYVFHTVNIQNILMAQNRSK-SILLRIFQV--FIKS-SFLHRLN 258
           I+ DI++L+N  +F  + I+N     N  K SIL+R+F    F KS SF+ R+N
Sbjct: 240 IMYDIISLYNKRLFRIIFIENYSCLNNLEKNSILIRMFNYGKFSKSFSFIKRIN 293


>UniRef50_Q859W7 Cluster: Protein ycf2; n=1; Anthoceros
           formosae|Rep: Protein ycf2 - Anthoceros formosae
           (Hornwort)
          Length = 2392

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 21/100 (21%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
 Frame = +1

Query: 19  NSFRYSR-KIKLLAKVEYI*VGFVRPRVCTFIIN------DILALFNTYVFHTVNIQNIL 177
           N F Y + K++ + K EY+    +   +   +         ++ LF+  +  ++ ++++ 
Sbjct: 8   NKFSYRKFKLEEIKKYEYLLNSCINWNLIKLVTGIPSNREHLIKLFDLRILSSLILRDLR 67

Query: 178 MAQNRSKSILLRIFQVFIKSSFLHRLNVTKLIINRKCVLQ 297
            ++ + KS++L+ F + I S F+HR+N   ++    C L+
Sbjct: 68  KSEMK-KSLILKSFPLLILSMFIHRMNSRNIVEINNCHLE 106


>UniRef50_A7TPY7 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 660

 Score = 33.1 bits (72), Expect = 4.3
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 487 VTKYYSEFHRSQNYSLYFYFSNFKML 410
           VTK +S+ H SQNYS Y  + N+K +
Sbjct: 403 VTKAHSKLHESQNYSTYQNYDNYKKI 428


>UniRef50_Q7R934 Cluster: Putative uncharacterized protein PY07033;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY07033 - Plasmodium yoelii yoelii
          Length = 1061

 Score = 32.3 bits (70), Expect = 7.5
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -2

Query: 490 LVTKYYSEFHRSQNY--SLYFYFSNFKMLSTIALPIGPIIEVTSVMFVGATKSINK*IKN 317
           ++ KY+ + ++ +N+   ++F+FSN K    I L I    ++    +   TK  N  +KN
Sbjct: 212 MIKKYFIDLYKKKNFLQDMFFFFSNMKKKKKIVLKI-ENSQIDKENYPNFTKDANICVKN 270

Query: 316 TT 311
            T
Sbjct: 271 KT 272


>UniRef50_Q4MZG7 Cluster: Putative uncharacterized protein; n=1;
           Theileria parva|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 735

 Score = 32.3 bits (70), Expect = 7.5
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 472 NNTLSLNNKVFNTKLIKKNVFNEN 543
           NN L  NNK+ NT L K N+FN+N
Sbjct: 96  NNILYDNNKLHNTDLNKHNIFNQN 119


>UniRef50_O58590 Cluster: Putative uncharacterized protein PH0860;
           n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
           protein PH0860 - Pyrococcus horikoshii
          Length = 221

 Score = 32.3 bits (70), Expect = 7.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 436 FYFSNFKMLSTIALPIGPIIEVTSVMFVGATKSINK 329
           FYF N  +L  I+ P+GP++E      V  TK  NK
Sbjct: 156 FYFVNVDLLEKISPPMGPLLEEEFTTVVKLTKEDNK 191


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,493,204
Number of Sequences: 1657284
Number of extensions: 8079068
Number of successful extensions: 20190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20169
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)