Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1180
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21549| Best HMM Match : SNF (HMM E-Value=2.3e-18)                   30   1.1  
SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_47074| Best HMM Match : Ion_trans (HMM E-Value=2.5e-38)             28   5.7  
SB_53392| Best HMM Match : Thermopsin (HMM E-Value=0.49)               28   5.7  
SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_21549| Best HMM Match : SNF (HMM E-Value=2.3e-18)
          Length = 515

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 278 IGNVCCKISFICCIFYLFI 334
           IG   C IS++CCI+Y+ I
Sbjct: 366 IGYAICMISYLCCIYYIVI 384


>SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1413

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = -2

Query: 496 CYLVTKYYSEFHRSQNYSLYFYFSNFKMLSTIALPI----GPIIEVTSVMFVGATKSINK 329
           C LV KY+SE+H       Y   +N +      L +     PI +  S+ +  + + +NK
Sbjct: 521 CTLVEKYFSEYHPLHQMLRYHCRANLETNKLFELKLYGEKAPIYKALSIDYDNSVRMVNK 580


>SB_47074| Best HMM Match : Ion_trans (HMM E-Value=2.5e-38)
          Length = 467

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 28  RYSRKIKLLAKVEYI*VGFVRPRVCTFIINDILALFNTYVFHTVN 162
           RYSR +KLLAK   +  G +   +   IIN  + LF++ V++  N
Sbjct: 316 RYSRGLKLLAKTLVLSGGDLPSILAVLIIN--IILFSSIVYYVEN 358


>SB_53392| Best HMM Match : Thermopsin (HMM E-Value=0.49)
          Length = 750

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 112 INDILALFNTYVFHTVNIQNIL 177
           +N IL   NT   HTVNI+N+L
Sbjct: 318 VNGILVYDNTQADHTVNIKNLL 339


>SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1093

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 112 INDILALFNTYVFHTVNIQNIL 177
           +NDI    NT   HT+NI+N+L
Sbjct: 175 VNDIPVYDNTQADHTINIKNLL 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,453,829
Number of Sequences: 59808
Number of extensions: 248155
Number of successful extensions: 497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)