Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1180
         (545 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    27   0.40 
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   5.0  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 27.1 bits (57), Expect = 0.40
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 112 INDILALFNTYVFHTVNIQNILMAQNRSKSILLRIFQVFIKSSFLHRL 255
           I D+  + ++ +   + +  +L+  NR+   +LR   +F   SFL  L
Sbjct: 773 IRDLGIILDSRLNFKLQLDEVLLKANRTLGFILRFTSIFRDQSFLRNL 820


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 69  YLSRFCSSPCMYIYYK*HSRFIQHLRFSYR*YTEHI 176
           Y +R C      IY+  HS +  + RF YR Y   I
Sbjct: 425 YQTRRCQRS-RSIYFDTHSLYCSYNRFRYRRYLSKI 459


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,478
Number of Sequences: 2352
Number of extensions: 8168
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50460840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)