Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1180
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-2|CAB63397.2|  322|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC006742-6|AAF60498.1|  778|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC006742-3|AAF60501.1|  778|Caenorhabditis elegans Hypothetical ...    27   6.7  
U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four) in...    27   8.8  
U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four) in...    27   8.8  

>AL032652-2|CAB63397.2|  322|Caenorhabditis elegans Hypothetical
           protein Y63D3A.3 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 19  NSFRYSRKIKLLAKVEYI*VGFVRPRV-CTFIINDILALFNTYVFHTVNIQNILM 180
           + F   R  + +AK+  +  G+   ++ C F +N+ + L+ TY +  V++Q  ++
Sbjct: 267 SQFEILRDDESIAKISILEHGYWYNKIHCYFSLNEAMNLYTTYFWDIVHLQEKIL 321


>AC006742-6|AAF60498.1|  778|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.2 protein.
          Length = 778

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 502 ILCYLVTKYYSEFHRSQNYSLYFYFSNFKMLSTI 401
           +LC++   +YS + +  NY+   YFS F +L+ +
Sbjct: 283 MLCFV--PFYSSYEKRDNYNFMQYFSFFYVLAVL 314


>AC006742-3|AAF60501.1|  778|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.6 protein.
          Length = 778

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 502 ILCYLVTKYYSEFHRSQNYSLYFYFSNFKMLSTI 401
           +LC++   +YS + +  NY+   YFS F +L+ +
Sbjct: 283 MLCFV--PFYSSYEKRDNYNFMQYFSFFYVLAVL 314


>U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform a protein.
          Length = 783

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 165 TEHINGAKSIKKYLVENISSIHKIFLSP*TKC-N*INNQSEMCAARFPLYVVFFIYLFID 341
           T +++  + I KY  +      K+      +C   I N++ +C     L ++F +  F+D
Sbjct: 588 TGNMDTVEQIAKYYTKTDRHARKMIEEDALRCIRSIQNRARVCTEHLRLSIIFMMIKFVD 647

Query: 342 LVAP 353
             +P
Sbjct: 648 PFSP 651


>U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform b protein.
          Length = 788

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 165 TEHINGAKSIKKYLVENISSIHKIFLSP*TKC-N*INNQSEMCAARFPLYVVFFIYLFID 341
           T +++  + I KY  +      K+      +C   I N++ +C     L ++F +  F+D
Sbjct: 593 TGNMDTVEQIAKYYTKTDRHARKMIEEDALRCIRSIQNRARVCTEHLRLSIIFMMIKFVD 652

Query: 342 LVAP 353
             +P
Sbjct: 653 PFSP 656


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,762,746
Number of Sequences: 27780
Number of extensions: 210096
Number of successful extensions: 562
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)