Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1180
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   8.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.2  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 270 NNQSEMCAARFPLYV 314
           NNQ++    R PLYV
Sbjct: 70  NNQADKSEKRIPLYV 84


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 201 YLVENISSIHKIFLSP*TKCN*INNQSEMCAAR 299
           YL  ++  I   F++P   CN    ++ +CA R
Sbjct: 9   YLFLSVILITSYFVTPVMPCNCKAPETALCARR 41


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 321 FIYLFIDLVAPTNMTDVTSIIGPIGNAIVDNILKL 425
           ++YL   L+A   +  +++ +GPI +   +N+  L
Sbjct: 276 YLYLHQQLLARYELNRLSNGLGPIKDIDYENVQSL 310


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 502 ILCYLVTKYYSEFHRSQNYS 443
           I+  ++ KY+ +FH  Q +S
Sbjct: 1   IIDSMLPKYHQQFHHQQLFS 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,511
Number of Sequences: 438
Number of extensions: 2618
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)