Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1180
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13420.1 68417.m02095 potassium transporter (HAK5) identical ...    31   0.66 

>At4g13420.1 68417.m02095 potassium transporter (HAK5) identical to
           K+ transporter HAK5 [Arabidopsis thaliana]
           gi|7108597|gb|AAF36490; similar to high-affinity
           potassium transporter AtKUP1p [Arabidopsis thaliana]
           gi|2688979|gb|AAB88901; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 785

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 162 YTEHINGAKSIKKYLVENISSIHKIFL 242
           YTE +NG   +  + + N+SS+H +F+
Sbjct: 563 YTELVNGITPLFSHYISNLSSVHSVFV 589


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,516,398
Number of Sequences: 28952
Number of extensions: 170892
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)