Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1177
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   4.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   7.0  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   9.3  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    25   9.3  

>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 292 KLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRN 420
           +++L+  + +  I NK     LK +LK E+K T + + V LRN
Sbjct: 223 EVYLKEVLDSIAILNKRGPYALKYSLKPEYKGTMDAASVELRN 265


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 458 GRTFTCVQMLTERSFRASFSVGTVRERLTSREDVHFSLSNASRPVRR 598
           G+T   +Q+   R     +S+G V   + +RED  F + N + P  R
Sbjct: 98  GKTALLLQLC--RLLGEKYSIGVVTNDIFTREDQEFLIRNKALPEER 142


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -1

Query: 220 ATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 113
           A G+AP T K P   R +  +       LP T   V
Sbjct: 40  AVGVAPDTAKYPNGARWYKQIATYDLATLPGTAKEV 75


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 586 SRCITKREVHVFSGR*TFTYRADGERRTK 500
           SRC+T  E+H      +F Y+   E + K
Sbjct: 190 SRCLTVEELHTLMNSFSFIYKLPEEEKEK 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,374
Number of Sequences: 5004
Number of extensions: 61032
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)