Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1177
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554     31   1.0  
03_03_0249 + 15832086-15833261                                         30   2.4  
04_04_0720 - 27543998-27544230,27544339-27544432,27544571-275448...    29   3.2  
03_06_0640 + 35230664-35231065,35231957-35232202                       29   4.2  
10_05_0055 - 8625420-8625737,8625835-8625988,8626202-8626439,862...    29   5.5  
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406...    29   5.5  
01_05_0686 - 24277812-24277909,24278029-24278081,24278227-242783...    28   7.3  
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998     28   9.7  

>06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554
          Length = 449

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 289 HPLRAALSSNPT*GASLSPRPSVATGLAPSTGKRP 185
           HP+  A SS+P    SL P PSVAT +A      P
Sbjct: 31  HPIFGAASSSPIAHRSLLPTPSVATAVAVQVDPPP 65


>03_03_0249 + 15832086-15833261
          Length = 391

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 286 PLRAALSSNPT*GASLSPRPSVAT-GLAPSTGKRPRSRRTWTGVVATRKR 140
           PLR  LS+ P    + SP PS A   L  +TGK PR    WT   A   R
Sbjct: 207 PLRRQLSA-PMPPPAPSPAPSTARRSLDSATGKAPRWIEFWTDAAAAGDR 255


>04_04_0720 -
           27543998-27544230,27544339-27544432,27544571-27544898,
           27545387-27545850
          Length = 372

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 298 GVYHPLRAALSSNPT*GASLSPRPSVATGLAPSTGKRPRSRR 173
           G  H +R A SS+   GA+LSP  S+++G  P+T    R+ R
Sbjct: 35  GGKHLVRLAGSSSLRGGAALSPAVSISSGSRPATRAGARALR 76


>03_06_0640 + 35230664-35231065,35231957-35232202
          Length = 215

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 636 YSFRTRSDRVSFRSTHSDGIIKLITHALK 722
           YS R R+ R    ST+ DGI  L+T+  K
Sbjct: 156 YSIRKRNSRTGLPSTYYDGIYLLVTYFTK 184


>10_05_0055 -
           8625420-8625737,8625835-8625988,8626202-8626439,
           8626610-8626820,8626909-8627033,8627451-8627570,
           8627749-8628625
          Length = 680

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 271 LSSNPT*GASLSPRPSVATGLAPSTGKR 188
           L+++P+ G+S SP PS +  L P  GKR
Sbjct: 268 LAASPSPGSSSSPLPSPSPSLPPLEGKR 295


>01_06_0362 +
           28739969-28740232,28740336-28740452,28740560-28740660,
           28741251-28741322,28741433-28741514,28741607-28741687,
           28742548-28742589,28743009-28743047,28743278-28743343,
           28743444-28743590,28743638-28743652
          Length = 341

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 50  SLVAASEQEYSPALNPVVLIDNGRCGVREVPL 145
           S V  +E+ Y+P+++PV+L D  R G + V L
Sbjct: 185 SFVDKTEKRYNPSMSPVILKDKWRKGSQWVAL 216


>01_05_0686 -
           24277812-24277909,24278029-24278081,24278227-24278309,
           24278353-24278401,24278466-24278514,24279455-24280418
          Length = 431

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 285 RLGLHSQATRPKERPSRRDPPSLRAWHPLRENGPVQD 175
           +L  H++   P  RP++ DP   R WH + +   + D
Sbjct: 168 QLRRHARENHPTVRPTQVDPERQRDWHRMEQQRDLGD 204


>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
          Length = 473

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 244 SLSPRPSVATGLAPSTGKRPRSRRTWTGVVA 152
           +L  RPSV  G A +T + P SRR   GV A
Sbjct: 97  TLYTRPSVLAGAASATTRSPSSRRGGGGVRA 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,943,418
Number of Sequences: 37544
Number of extensions: 416124
Number of successful extensions: 1149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)