Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1177
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   5.0  
U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   6.6  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   6.6  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 545 TLNVHVPCRRRTTHETNVPSTSERT*TYAR 456
           T +VHVP  R +TH T+V + +E    ++R
Sbjct: 909 TASVHVPVSRGSTHSTDVSTQTEAASKFSR 938


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 545 TLNVHVPCRRRTTHETNVPSTSERT*TYAR 456
           T +VHVP  R +TH T+V + +E    ++R
Sbjct: 909 TASVHVPVSRGSTHSTDVSTQTEAASKFSR 938


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 25/89 (28%), Positives = 34/89 (38%)
 Frame = -2

Query: 672 GTIRGPNVF*TNKTRTVSRAIVLNPRRTGRDALLREKCTSSRDVKRSRTVPTENDARNER 493
           GT  GP    +    TV R  V  P+         +    S  V RS   P + D  N +
Sbjct: 410 GTSFGPTKGFSYDHHTVPR-YVEPPKPVVYSLSANKSLARSASVPRSSAPPEQRDVWNIQ 468

Query: 492 SVNI*THVNVRPRENDESLRSFIRVSQVY 406
              +   VN+R    DE+LR+  R    Y
Sbjct: 469 QSEVDKEVNIRTLLTDEALRAPKREQSPY 497


>U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical
           protein C01F1.1 protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 326 GLAVIFSLRWSLPPA*GCTLKQPDLRSVPLAA-TLRRYGPGTLYGKTAPFKTNLDRSRRD 150
           G+  + + +W++    G T+++ D + V L+  T++ YG G+ YGK A  +    +  R 
Sbjct: 36  GMDKVDTSKWTIDS--GVTMEREDNQRVILSTQTVQEYGEGSEYGKAAREEARRKKYGRQ 93

Query: 149 EK 144
            K
Sbjct: 94  SK 95


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 294   TPSKAKYDRETDSEQVP*GKVEKNFEERVQEYVKPFRGKPAKL 422
             T  K K+ +  DS +     VE+  EE+V + +K  RGK  KL
Sbjct: 11655 TSKKDKFGKRQDSREAS-ATVEQQGEEKVTKNLKGSRGKKEKL 11696


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 294   TPSKAKYDRETDSEQVP*GKVEKNFEERVQEYVKPFRGKPAKL 422
             T  K K+ +  DS +     VE+  EE+V + +K  RGK  KL
Sbjct: 11655 TSKKDKFGKRQDSREAS-ATVEQQGEEKVTKNLKGSRGKKEKL 11696


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = -1

Query: 340  TCSLSVSRSYLALDGVYHPLRAALSSNPT*GASLSPR----PSVATGLAPSTGKRPRSRR 173
            T  ++ +RS+        PL  A +S  T  A+L+      PS +     ST +RP S  
Sbjct: 898  TVKMNCARSHTTTVEPSTPLETASTSQSTPSATLTSTTENIPSTSKIPETSTTQRPTSPI 957

Query: 172  TWTGVVATRKRNLPNTTSP 116
              +G  +T       TTSP
Sbjct: 958  LTSGATSTSSSTESTTTSP 976


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,700,379
Number of Sequences: 27780
Number of extensions: 345855
Number of successful extensions: 1003
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)