Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1176
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    81   2e-16
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    28   1.6  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    27   2.1  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   3.6  
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    26   4.8  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   8.4  

>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 34/68 (50%), Positives = 51/68 (75%)
 Frame = +2

Query: 47  HEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQE 226
           ++++   +  +DPL FLR  PQFQQ+R ++QQNP +L  +LQQIGQ +PAL Q I+Q+ E
Sbjct: 234 NQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPE 293

Query: 227 AFVRMLNE 250
           AF+++L E
Sbjct: 294 AFLQLLAE 301



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = +1

Query: 250 TRNPSA-AGVASDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFAC 426
           T+NP A   + ++    +   P  G Q  IQ++ ++ E+I+RL  LGF  ++VIQAY AC
Sbjct: 289 TQNPEAFLQLLAEGAEGESALPSGGIQ--IQITQEESESIDRLCQLGFDRNIVIQAYLAC 346

Query: 427 EKNENLAANFLLSQNFD 477
           +KNE LAAN+L     +
Sbjct: 347 DKNEELAANYLFEHGHE 363



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +3

Query: 3   RAVEYLITGIPEE 41
           RAVEYL+TGIPE+
Sbjct: 177 RAVEYLLTGIPED 189


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 283 DENVADIQQPQLGSQNVIQV-SAQDKEAIERLKALGFPEHMVIQAYFACEK 432
           D  ++ +  P+    +V++  SA  + A  RLK LG  +  ++     CEK
Sbjct: 442 DNTLSSVDIPRASIAHVVRATSAMSQSASARLKNLGLQQKAILCTLVVCEK 492


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 125 RAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEP 253
           R V Q++   LN ++ Q   T P  ++ I  ++E  +   N P
Sbjct: 624 RTVAQRHKEQLNQLMNQFNSTQPHFIRCIVPNEEKKMHTFNRP 666


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 47  HEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNL 154
           H Q+  +S+  +P    R  P F +   V+QQ P L
Sbjct: 262 HFQQIVQSNSNNPDQSSRSDPNFVEATPVVQQTPEL 297


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 50  EQEAEESSDEDPLAFLRDQPQFQQMRAVIQ 139
           E+E EE  DED L  + D+ + ++ R + Q
Sbjct: 516 EEEDEEDVDEDELDLMTDEQRMEEGRRMFQ 545


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 495 NRMTRQKEKVLFFLQNSLF*STQSVYFIH 581
           NR+T  KEK+    +  LF +  +VY +H
Sbjct: 90  NRITESKEKLSLSQKEKLFQNLPTVYILH 118


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/14 (64%), Positives = 14/14 (100%)
 Frame = +2

Query: 50  EQEAEESSDEDPLA 91
           E+EAEE+SD++PL+
Sbjct: 279 EEEAEETSDDEPLS 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,766
Number of Sequences: 5004
Number of extensions: 46110
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)