Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1176
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 58 5e-09
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 58 5e-09
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 56 2e-08
02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794,440... 56 4e-08
12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613 31 0.71
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 31 0.71
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 31 0.71
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 31 0.94
02_03_0329 + 17806787-17807294,17819559-17819710 30 2.2
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 29 2.9
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 29 3.8
01_01_0004 + 15599-15976,16383-16474,16558-17258,17501-17571,179... 28 6.6
01_07_0028 - 40588611-40588718,40588812-40588901,40589966-405901... 28 8.8
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 58.4 bits (135), Expect = 5e-09
Identities = 23/56 (41%), Positives = 41/56 (73%)
Frame = +2
Query: 86 LAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEP 253
L LR+ QF+ + +++Q NP +L +LQ++G+ NP +LQ+I ++Q F+R++NEP
Sbjct: 274 LDVLRNNSQFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEP 329
Score = 54.4 bits (125), Expect = 9e-08
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = +1
Query: 301 IQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS--QNF 474
+ Q G + V+ ++ EAI+RL+ +GF +V++ +FAC K+E LAAN+LL F
Sbjct: 338 LDQFAAGMPQTVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEF 397
Query: 475 DD 480
DD
Sbjct: 398 DD 399
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 58.4 bits (135), Expect = 5e-09
Identities = 23/52 (44%), Positives = 39/52 (75%)
Frame = +2
Query: 95 LRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNE 250
LR PQFQ + A++Q NP +L +LQ++G+ NP +L++I ++Q F+R++NE
Sbjct: 287 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNE 338
Score = 54.4 bits (125), Expect = 9e-08
Identities = 21/48 (43%), Positives = 36/48 (75%)
Frame = +1
Query: 334 IQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQNFD 477
+ V+ +++EAI+RL+A+GF +V++ +FAC K+E LAAN+LL +
Sbjct: 361 LTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELAANYLLDHGHE 408
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/53 (39%), Positives = 39/53 (73%)
Frame = +2
Query: 95 LRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEP 253
LR+ QF+ + +++Q NP +L +LQ++G+ NP +LQ+I ++Q F+ ++NEP
Sbjct: 265 LRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEP 317
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +1
Query: 283 DENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLL 462
+EN+ D Q P+ Q I V+ ++ EAI RL+A+GF +V+ +FAC K+E LAAN+LL
Sbjct: 323 EENLLD-QFPEAMPQT-IAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLL 380
Query: 463 S--QNFDD 480
FDD
Sbjct: 381 DHMNEFDD 388
>02_01_0593 +
4408229-4408294,4408764-4409096,4409756-4409794,
4409870-4409937,4410024-4410068,4410478-4410655,
4410740-4410871,4410941-4411009,4411258-4411305,
4411498-4411545,4411654-4411763,4412044-4412125,
4412232-4412345
Length = 443
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/49 (48%), Positives = 36/49 (73%)
Frame = +1
Query: 334 IQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQNFDD 480
I V+ +++EAI RL+ +GF VI+A+FAC++NE LAAN+LL D+
Sbjct: 394 INVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAANYLLEHAADE 442
Score = 48.8 bits (111), Expect = 4e-06
Identities = 17/47 (36%), Positives = 34/47 (72%)
Frame = +2
Query: 113 FQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEP 253
FQ +R ++ NP +L +LQ++ + NP LL++I ++ + F++++NEP
Sbjct: 327 FQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEP 373
>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
Length = 787
Score = 31.5 bits (68), Expect = 0.71
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -1
Query: 206 LVIKLDLSDQSAVTQHLTNWDSVV*QHAFAEIVVDLAGRLMGLHQNFLQLLVH 48
L++ +L +V HL N D+++ A EIV+ + L+ LHQ Q +VH
Sbjct: 308 LLLVYELMCNGSVESHLYNRDTLLPWPARYEIVLGIGSALLYLHQETEQRVVH 360
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 31.5 bits (68), Expect = 0.71
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 65 ESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRML 244
E DP AFL+ Q Q Q + + +QNP A + Q +LQ+ Q Q+ +
Sbjct: 247 EQQSSDPSAFLQQQQQQQHLLQLTKQNPQAAAAAQLNLLQ-QQRILQMQQQQQQQQQILK 305
Query: 245 NEP 253
N P
Sbjct: 306 NLP 308
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 31.5 bits (68), Expect = 0.71
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 65 ESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRML 244
E DP AFL+ Q Q Q + + +QNP A + Q +LQ+ Q Q+ ++L
Sbjct: 238 EQPTSDPSAFLQQQQQQQHLLQLTKQNPQAAAAAQLNLLQ-QQRILQMQQQQQQQQQQIL 296
Query: 245 -NEPGTLLLRE*HQMRMLLIFNNLN 316
N P L R Q + LL +LN
Sbjct: 297 KNLP---LQRNQLQQQQLLRQQSLN 318
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 31.1 bits (67), Expect = 0.94
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +2
Query: 68 SSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVI 211
+SD A+L +QP F QM +Q+NP+ LN L ++P ++QV+
Sbjct: 146 ASDPTTRAYL-EQPDFMQMLRDVQRNPSSLNMYL-----SDPRMMQVL 187
>02_03_0329 + 17806787-17807294,17819559-17819710
Length = 219
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 41 MLHEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQI 178
++ E++AEE + P + +DQ + A+I Q+ L+N + I
Sbjct: 119 VVEEEDAEEQEEPPPCSNFQDQVDYAVQHALINQSGVLVNTLTNMI 164
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 101 DQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVIS 214
DQP F +M +Q+NP+ LN L ++P ++QV+S
Sbjct: 315 DQPDFMRMLRDVQRNPSSLNNYL-----SDPRMVQVLS 347
>10_07_0061 + 12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 50 EQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQT-NPALLQ---VISQ 217
+Q+ ++ + + Q Q QQ + IQQ + + LQQ Q +PA Q V+SQ
Sbjct: 1140 QQQQQQQQQQQIQQQQQQQQQQQQQQQQIQQQQQQMGSPLQQAAQVGSPAGSQQSLVMSQ 1199
Query: 218 HQE 226
HQ+
Sbjct: 1200 HQQ 1202
>01_01_0004 +
15599-15976,16383-16474,16558-17258,17501-17571,
17968-18057,18142-18321,18531-18593
Length = 524
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 193 SFITSNQPTSRSLCQNVK*TRNPSAAGVASDENVADIQQPQLGSQ 327
SF +P R+ K RNP+ AGV E V ++Q+ Q
Sbjct: 479 SFHKKRKPIRRATSNGNKPKRNPADAGVIDIERVGEMQESSSSRQ 523
>01_07_0028 -
40588611-40588718,40588812-40588901,40589966-40590125,
40590547-40590595,40591158-40591338
Length = 195
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 355 KEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS 465
+E +++L +GFPE MV + +EN+A L S
Sbjct: 158 EEKVQKLVEMGFPEDMVRSVLKSVNGDENMALEKLCS 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,241,630
Number of Sequences: 37544
Number of extensions: 241465
Number of successful extensions: 640
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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