Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1176
(731 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 81 1e-15
SB_48111| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_4147| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_132| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25) 29 2.9
SB_28661| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_33697| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_49896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_56822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_19132| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_12360| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_46889| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/70 (54%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Frame = +2
Query: 50 EQEAEESSDE--DPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQ 223
++ EE++ E L FLR QPQF MR ++QQNP +L +LQ +GQ+NP+LLQ+IS HQ
Sbjct: 282 DEGEEETAAEGVSSLEFLRTQPQFITMRRMVQQNPGVLPQLLQSMGQSNPSLLQLISSHQ 341
Query: 224 EAFVRMLNEP 253
+ F+RMLNEP
Sbjct: 342 DEFIRMLNEP 351
>SB_48111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 579 HFYRACHYSISNKFLIVQWFIIFVIMFI 662
H +RA S++ K LIV WFI FV F+
Sbjct: 135 HPFRAPSASLTKKLLIVSWFIGFVRAFV 162
>SB_4147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 47 HEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQV 208
HEQ + S DPL R P++ + N L VLQ+ NP + Q+
Sbjct: 15 HEQTSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQL 68
>SB_132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 47 HEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQV 208
HE+++ S DPL R P++ + N L VLQ+ NP + Q+
Sbjct: 3 HEKKSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWKNPGVTQL 56
>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
Length = 1088
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 319 GSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS 465
G+ Q +A ++EA+ + ++GF I+A A + N AA+++ S
Sbjct: 884 GASKGAQAAAVNEEAVSMIISMGFTRDQAIKALKATDNNLERAADWIFS 932
>SB_28661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 41 MLHEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQV 208
++H ++ S DPL R P++ + N L VLQ+ NP + Q+
Sbjct: 6 LIHNHKSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQL 61
>SB_33697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 41 MLHEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQV 208
MLH + S DPL R P++ + N L VLQ+ NP + Q+
Sbjct: 1 MLHNVISNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQL 56
>SB_49896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +2
Query: 11 RIFNNRYS*RMLHEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTN 190
RI N S LH + + DPL R P++ + N L VLQ+ N
Sbjct: 45 RIGLNACSFVRLHHSKLSSTGPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWEN 104
Query: 191 PALLQV 208
P + Q+
Sbjct: 105 PGVTQL 110
>SB_56822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 44 LHEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQV 208
L E+++ S DPL R P++ + N L VLQ+ NP + Q+
Sbjct: 17 LQEKKSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQL 71
>SB_19132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +2
Query: 8 CRIFNNRYS*RMLHEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQT 187
C +F + H+ ++ S DPL R P++ + N L VLQ+
Sbjct: 2 CFMFTPQREKTSKHKAKSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWE 61
Query: 188 NPALLQV 208
NP + Q+
Sbjct: 62 NPGVTQL 68
>SB_12360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 44 LHEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQV 208
L ++ E S DPL R P++ + N L VLQ+ NP + Q+
Sbjct: 13 LKREDEREKSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQL 67
>SB_46889| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 754
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 44 LHEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQV 208
L E + + +S DPL R P++ + N L VLQ+ NP + Q+
Sbjct: 626 LSEYDTKATSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQL 680
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 119 QMRAVIQQNPNLLNAVLQQIGQTNPALLQV 208
Q R V+Q+NPN+ A++ I ++ LL V
Sbjct: 170 QYRKVLQENPNIKIAIIDHITSSSALLLPV 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,567,170
Number of Sequences: 59808
Number of extensions: 309574
Number of successful extensions: 2164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2162
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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