Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1176
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69904-3|CAA93780.1|  372|Caenorhabditis elegans Hypothetical pr...    62   3e-10
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    32   0.48 
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting...    29   2.6  
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    29   2.6  
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting...    29   2.6  
Z68121-1|CAA92204.2|  174|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF302237-1|AAG21385.1|  174|Caenorhabditis elegans GATA-type tra...    28   5.9  
AF047653-2|AAC04459.1|  388|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z69904-3|CAA93780.1|  372|Caenorhabditis elegans Hypothetical
           protein ZK20.3 protein.
          Length = 372

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 28/61 (45%), Positives = 40/61 (65%)
 Frame = +2

Query: 65  ESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRML 244
           +    D L  L + PQ  ++RA+IQQNP +L AVLQQ+   NP L+Q I  +Q+AF+ +L
Sbjct: 238 DEDGNDDLNMLANMPQLAEIRALIQQNPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDLL 297

Query: 245 N 247
           N
Sbjct: 298 N 298



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
 Frame = +1

Query: 325 QNVIQVSAQDKEAIERLKAL--GFPEHMVIQAYFACEKNENLAANFLLSQNFDD 480
           ++VI +S ++  AIER+KA+    PE +V++AYFAC+KNE  A NF+ S N D+
Sbjct: 319 RHVIHLSPEEAAAIERIKAIVVNAPEAVVVEAYFACDKNEEAAINFIFS-NLDE 371


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
            protein H20J04.2 protein.
          Length = 1427

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 12/52 (23%), Positives = 32/52 (61%)
 Frame = +2

Query: 62   EESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQ 217
            +ES++    +++RD+ QF+Q+   +    N    +L+++ +  P+LL+++ +
Sbjct: 882  DESNNWTRWSYIRDREQFEQLLKSLNPRGNREVELLEELNEYRPSLLEILEE 933


>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
           protein protein8, isoform a protein.
          Length = 1132

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 113 FQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQE 226
           F+Q +   QQ P   N ++QQ+G  NP  L ++ Q Q+
Sbjct: 870 FKQQQQQQQQQPQQSN-LMQQLGNINPQFLALLLQQQQ 906



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +2

Query: 68   SSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEA 229
            SS E     L  + QF Q    IQQNP L+NA  Q I Q      Q+  QH +A
Sbjct: 946  SSPEMLGTLLNAKYQFPQFPQAIQQNPLLMNAQHQLILQQQ----QLAMQHAQA 995


>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
           protein protein8, isoform b protein.
          Length = 1780

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 113 FQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQE 226
           F+Q +   QQ P   N ++QQ+G  NP  L ++ Q Q+
Sbjct: 870 FKQQQQQQQQQPQQSN-LMQQLGNINPQFLALLLQQQQ 906


>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
           protein protein8, isoform c protein.
          Length = 1697

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 113 FQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQE 226
           F+Q +   QQ P   N ++QQ+G  NP  L ++ Q Q+
Sbjct: 870 FKQQQQQQQQQPQQSN-LMQQLGNINPQFLALLLQQQQ 906


>Z68121-1|CAA92204.2|  174|Caenorhabditis elegans Hypothetical
           protein T24D3.1 protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +1

Query: 88  SLPARSTTISANACCYTTESQFVKCCVTADWSDKSSFITSNQPTSRSL-CQNVK*TRNPS 264
           SL   STT S N+  +TT + F     +   S +SS   SN    +S  C N   T    
Sbjct: 65  SLNISSTTGSPNSSHFTTFTHFSTPSTSPSTSTQSSTTPSNSDNKKSFQCSNCSVTETIR 124

Query: 265 AAGVASDENV 294
              + S E +
Sbjct: 125 WRNIRSKEGI 134


>U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical
           protein F26G1.11 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
 Frame = +3

Query: 525 LFFLQNSLF*STQSVYFIHFYRA--------CHYSISNKFLIVQWFIIFVIMFICL 668
           L++LQ + F S ++++  H++RA           SI NK      F++ V +F C+
Sbjct: 147 LYYLQTNSFKSLETIFRRHYWRARPVKINRKVSSSIQNKCYFTHIFLLLVSLFNCI 202


>AF302237-1|AAG21385.1|  174|Caenorhabditis elegans GATA-type
           transcription factor protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +1

Query: 88  SLPARSTTISANACCYTTESQFVKCCVTADWSDKSSFITSNQPTSRSL-CQNVK*TRNPS 264
           SL   STT S N+  +TT + F     +   S +SS   SN    +S  C N   T    
Sbjct: 65  SLNISSTTGSPNSSHFTTFTHFSTPSTSPSTSTQSSTTPSNSDNKKSFQCSNCSVTETIR 124

Query: 265 AAGVASDENV 294
              + S E +
Sbjct: 125 WRNIRSKEGI 134


>AF047653-2|AAC04459.1|  388|Caenorhabditis elegans Hypothetical
           protein W02F12.3 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 169 TADWSDKSSFITSNQPTSRSLCQNVK*TRNPSAAGVASDENVADIQQPQLGSQNVIQVS 345
           T  W        SN+ ++     NV  T N +   V +D+ VAD+Q P L   + ++ S
Sbjct: 93  TQIWRAICPLCGSNRVSNTEENTNVPVTGNVTPRDVQTDQPVADLQSPPLSPSSSVEQS 151


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +1

Query: 190  SSFITSNQPTSRSLCQNVK*TRNPSAAGVASDENVADIQQPQLGSQNVIQVSAQDKEAI 366
            SS  ++    S S  +++K T  PS++ V+S  +    Q+P   S NV+++S +    I
Sbjct: 1082 SSSSSAPVKVSSSKIESMKTT--PSSSSVSSSGSDLQTQEPTQASSNVVEISEESSSPI 1138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,660,532
Number of Sequences: 27780
Number of extensions: 255731
Number of successful extensions: 714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)