Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1176
(731 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 68 6e-12
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 66 2e-11
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 66 2e-11
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 66 2e-11
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 65 4e-11
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 60 1e-09
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 30 1.8
At1g12270.1 68414.m01419 stress-inducible protein, putative simi... 30 1.8
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 29 3.2
At4g18140.1 68417.m02696 NLI interacting factor (NIF) family pro... 28 5.6
At1g62740.1 68414.m07081 stress-inducible protein, putative simi... 28 5.6
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 7.3
At3g59730.1 68416.m06664 receptor lectin kinase, putative simila... 27 9.7
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c... 27 9.7
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 27 9.7
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 27 9.7
At1g03590.1 68414.m00339 protein phosphatase 2C family protein /... 27 9.7
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 68.1 bits (159), Expect = 6e-12
Identities = 28/65 (43%), Positives = 46/65 (70%)
Frame = +2
Query: 59 AEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVR 238
A+ + L FLR+ QFQ +RA++Q NP +L +LQ++G+ NP L+++I +HQ F+R
Sbjct: 244 ADAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLR 303
Query: 239 MLNEP 253
++NEP
Sbjct: 304 LINEP 308
Score = 61.7 bits (143), Expect = 5e-10
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Frame = +1
Query: 274 VASDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAAN 453
V +ENV ++Q + + V+ +++EAIERL+ +GF MV++ +FAC KNE LAAN
Sbjct: 309 VEGEENV--MEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAAN 366
Query: 454 FLLS--QNFDD 480
+LL F+D
Sbjct: 367 YLLDHMHEFED 377
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 66.5 bits (155), Expect = 2e-11
Identities = 27/56 (48%), Positives = 42/56 (75%)
Frame = +2
Query: 86 LAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEP 253
L FLR+ QFQ +RA++Q NP +L +LQ++G+ NP L+++I HQ F+R++NEP
Sbjct: 290 LDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEP 345
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/56 (51%), Positives = 41/56 (73%)
Frame = +1
Query: 295 ADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLL 462
A + QPQ IQV+ +++EAIERL+A+GF +V++ +FAC KNE LAAN+LL
Sbjct: 361 AGMPQPQ-----AIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLL 411
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/65 (43%), Positives = 45/65 (69%)
Frame = +2
Query: 59 AEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVR 238
A S D L FLR+ QFQQ+R ++ NP +L +LQ++G+ NP LL++I ++Q F++
Sbjct: 229 AAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQ 288
Query: 239 MLNEP 253
++NEP
Sbjct: 289 LVNEP 293
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +1
Query: 307 QPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQNFD 477
QP+ + I V+ ++EAI+RL+A+GF +VI+A+ AC++NE LAAN+LL + D
Sbjct: 306 QPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGD 362
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/65 (43%), Positives = 45/65 (69%)
Frame = +2
Query: 59 AEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVR 238
A S D L FLR+ QFQQ+R ++ NP +L +LQ++G+ NP LL++I ++Q F++
Sbjct: 235 AAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQ 294
Query: 239 MLNEP 253
++NEP
Sbjct: 295 LVNEP 299
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +1
Query: 307 QPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQNFD 477
QP+ + I V+ ++EAI+RL+A+GF +VI+A+ AC++NE LAAN+LL + D
Sbjct: 312 QPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGD 368
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/60 (45%), Positives = 43/60 (71%)
Frame = +2
Query: 74 DEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEP 253
D L FLR QFQQ+R+++ NP +L +LQ++G+ NP LL++I ++Q F+++LNEP
Sbjct: 237 DLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEP 296
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/66 (40%), Positives = 45/66 (68%)
Frame = +1
Query: 280 SDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFL 459
SD +V QP + + V+ +++E+IERL+A+GF +VI+A+ +C++NE LAAN+L
Sbjct: 300 SDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYL 359
Query: 460 LSQNFD 477
L + D
Sbjct: 360 LEHSAD 365
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +1
Query: 307 QPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQNFD 477
QP+ + I V+ ++EAI+RL+A+GF +VI+A+ AC++NE LAAN+LL + D
Sbjct: 292 QPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGD 348
Score = 34.7 bits (76), Expect = 0.064
Identities = 12/28 (42%), Positives = 23/28 (82%)
Frame = +2
Query: 170 QQIGQTNPALLQVISQHQEAFVRMLNEP 253
Q++G+ NP LL++I ++Q F++++NEP
Sbjct: 252 QELGKQNPQLLRLIQENQAEFLQLVNEP 279
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/67 (34%), Positives = 29/67 (43%)
Frame = +1
Query: 259 PSAAGVASDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNE 438
PS + VA+ Q QN + + + I +L LGF VIQA E NE
Sbjct: 346 PSGFTEKKNNTVANPTSQQPKRQNTSE-GPEFEAKIAKLVELGFSRDSVIQALKLFEGNE 404
Query: 439 NLAANFL 459
AA FL
Sbjct: 405 EQAAGFL 411
>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 572
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 68 SSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVL--QQIGQTNPALLQV 208
+SD FL+ QP F M IQ+NP+ LN L Q++ Q+ LL V
Sbjct: 141 TSDPSTRGFLQ-QPDFVNMMQEIQKNPSSLNLYLKDQRVMQSLGVLLNV 188
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 331 HSVTLIEVVEYQQHSHLMLLPQQKGSW 251
H ++ E +YQ H H + LP + W
Sbjct: 470 HCASIFEPFQYQGHEHPLFLPSEPNKW 496
>At4g18140.1 68417.m02696 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 312
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 56 EAEESSDEDPLAFLRDQPQ 112
EAE++ D DP FLR+QP+
Sbjct: 156 EAEQTEDFDPQIFLRNQPE 174
>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 571
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 95 LRDQPQFQQMRAVIQQNPNLLNAVL--QQIGQTNPALLQVISQHQEA 229
L QP F M IQ+NP+ LN L Q++ Q LL + + Q+A
Sbjct: 150 LLKQPDFVNMMKEIQRNPSNLNLYLQDQRVMQALGVLLNIQIRTQQA 196
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -1
Query: 116 EIVVDLAGRLMGLHQNFLQLLVH 48
+I+ D+A L+ LHQ ++Q+++H
Sbjct: 405 KIIKDVASALLHLHQEWVQIIIH 427
>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains pfam domains PF00139:
Legume lectins beta domain and PF00069: Protein kinase
domain
Length = 523
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -1
Query: 116 EIVVDLAGRLMGLHQNFLQLLVH 48
+I+ D+A L+ LHQ ++Q+++H
Sbjct: 440 KIIKDVASALLHLHQEWVQVIIH 462
>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
contains Pfam domain PF01902: Domain of unknown function
Length = 715
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 535 KKNNTFSFCLVIRLSQELSHQNSETAKS*LQDSHFFHKQN 416
+K+NTFS C + S E S ++ ET + L+ H N
Sbjct: 303 EKHNTFSICCWLEDSSESSKEDLETVLTELESQLLKHGYN 342
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/85 (23%), Positives = 36/85 (42%)
Frame = +2
Query: 2 KSCRIFNNRYS*RMLHEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIG 181
+S N + +++ +Q+ + + + Q Q QQM+ +QQ P QQ+
Sbjct: 414 QSSMSLNQQQISQIIQQQQQQSQLGQSQMNQSHSQQQLQQMQQQLQQQPQ------QQMQ 467
Query: 182 QTNPALLQVISQHQEAFVRMLNEPG 256
Q Q+ Q+ RML+ G
Sbjct: 468 QQQQQQQQMQINQQQPSPRMLSHAG 492
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/85 (23%), Positives = 36/85 (42%)
Frame = +2
Query: 2 KSCRIFNNRYS*RMLHEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIG 181
+S N + +++ +Q+ + + + Q Q QQM+ +QQ P QQ+
Sbjct: 414 QSSMSLNQQQISQIIQQQQQQSQLGQSQMNQSHSQQQLQQMQQQLQQQPQ------QQMQ 467
Query: 182 QTNPALLQVISQHQEAFVRMLNEPG 256
Q Q+ Q+ RML+ G
Sbjct: 468 QQQQQQQQMQINQQQPSPRMLSHAG 492
>At1g03590.1 68414.m00339 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2C;
PP2C (GI:3643088) [Mesembryanthemum crystallinum];
contains Pfam PF00481 : Protein phosphatase 2C domain;
Length = 447
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 50 EQEAEESSDEDPLAFLRDQ---PQFQQMRAVIQQNPNL 154
E E EES++ED L FL ++ F M ++ +PNL
Sbjct: 127 EAEKEESTEEDKLNFLWEEAFLKSFNAMDKELRSHPNL 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,331,571
Number of Sequences: 28952
Number of extensions: 218158
Number of successful extensions: 637
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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