Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1173
(771 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 25 1.0
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 23 4.2
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 23 4.2
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 23 4.2
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 23 4.2
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 23 4.2
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 4.2
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 4.2
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 5.5
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 5.5
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 22 7.3
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 7.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 7.3
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 7.3
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 7.3
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 7.3
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 9.6
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 24.6 bits (51), Expect = 1.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 449 RHGR**RKITIRDSYEAS*SNEYTLNI 529
+H R R T+ +SY+AS SN +L++
Sbjct: 29 KHSRRHRDFTVAESYDASSSNSDSLSM 55
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.6 bits (46), Expect = 4.2
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -3
Query: 727 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 575
R+ + R D S P++ S ++ NY +N NN+ ++ NY
Sbjct: 60 RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.6 bits (46), Expect = 4.2
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -3
Query: 727 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 575
R+ + R D S P++ S ++ NY +N NN+ ++ NY
Sbjct: 60 RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.6 bits (46), Expect = 4.2
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -3
Query: 727 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 575
R+ + R D S P++ S ++ NY +N NN+ ++ NY
Sbjct: 60 RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.6 bits (46), Expect = 4.2
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -3
Query: 727 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 575
R+ + R D S P++ S ++ NY +N NN+ ++ NY
Sbjct: 60 RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 22.6 bits (46), Expect = 4.2
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -3
Query: 727 RRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSWNY 575
R+ + R D S P++ S ++ NY +N NN+ ++ NY
Sbjct: 60 RKTSKERSRDRTERERSKEPKI--ISSLSNNYNYSNYNNNNYKQLCYNINY 108
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.6 bits (46), Expect = 4.2
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 34 MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 168
M C P DT +Y+F R Y + T VI + + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.6 bits (46), Expect = 4.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 426 QARKLPTPGTGGSDEK*RYGTLTRPRNRMS 515
+ +K+P T G D K + + RP+ RMS
Sbjct: 531 EQQKIPLRMTAGIDPKSIFNSGYRPKPRMS 560
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 5.5
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 6 YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 119
Y C + + LRR + ++++VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.2 bits (45), Expect = 5.5
Identities = 19/80 (23%), Positives = 29/80 (36%)
Frame = -2
Query: 494 RKSPVSLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 315
R S + TTS GSG V V + S N D+ L + + ++++
Sbjct: 222 RPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQP 281
Query: 314 **GRHLKDASPVLDHAICKS 255
H S L + C S
Sbjct: 282 SLASHHSHLSSALGRSACHS 301
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 21.8 bits (44), Expect = 7.3
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = -3
Query: 760 EEHRDRILILNRRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSW 581
E RDR R E ++ +S N ++ ++ + NY N NN+ Y++
Sbjct: 65 ERSRDRTE--RERSREPKIISSLS-NKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNI 121
Query: 580 NY 575
NY
Sbjct: 122 NY 123
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 7.3
Identities = 7/38 (18%), Positives = 21/38 (55%)
Frame = +3
Query: 6 YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 119
Y C + + ++ +RR + +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 7.3
Identities = 7/38 (18%), Positives = 21/38 (55%)
Frame = +3
Query: 6 YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 119
Y C + + ++ +RR + +++++P + +S+L
Sbjct: 224 YTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -3
Query: 703 TDDMSANVSVSPRMRCTDSAAHKCNYELF 617
T DM+ +S P+ ++A N E+F
Sbjct: 465 TKDMNLEISTRPKSNTVENACVLKNTEIF 493
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 7.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 420 RQQARKLPTPGTGGSDE 470
R+Q RK TPG SDE
Sbjct: 1768 RRQQRKQQTPGDVESDE 1784
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 7.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 420 RQQARKLPTPGTGGSDE 470
R+Q RK TPG SDE
Sbjct: 1764 RRQQRKQQTPGDVESDE 1780
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.4 bits (43), Expect = 9.6
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = -3
Query: 760 EEHRDRILILNRRFLERRLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRYWSW 581
E RDR R E ++ +S N S ++ + NY NN+ Y++
Sbjct: 298 ERSRDRTE--RERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNI 355
Query: 580 NY 575
NY
Sbjct: 356 NY 357
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,780
Number of Sequences: 438
Number of extensions: 4654
Number of successful extensions: 21
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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