Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1171
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    28   1.2  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.6  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    28   1.6  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    27   3.7  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   4.9  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    26   6.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.6  

>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -3

Query: 602 LRYSLTDVPPQS--NSPPGSVLEPDHA--GVLNGDGVSATSPLCTLGTKHRAPADIIDRA 435
           L YSLT V      ++  G +   D A  G ++ +G    +P  T   K R     + R 
Sbjct: 25  LNYSLTTVSDNVMIDTTRGEIEFSDSAVNGTMDIEGAPKFAPAKTSAEKKRGAKPQMRRV 84

Query: 434 PLPPNRVS 411
           P+PP+R++
Sbjct: 85  PIPPHRMT 92


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 579 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 713
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 605 HLRYSLTDVPPQSNSPPGS-VLEPDHAGVLNGDGVSATSPLCTLGTKHRAPADIIDRAP 432
           HLR S+  V   S SPP S  L+P H+ + N    S+  P   LG++        D  P
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKPIHS-LSNPSTASSLEPSSPLGSEDECHPPTSDMQP 226


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -3

Query: 731 LYTKGSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELALGHLR-YSLTDV-PPQSNS 561
           L+  GS G  F+   RT  LD +        + V++L   ++ + + Y+L  + PP +  
Sbjct: 125 LFMVGSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAK 184

Query: 560 PPGSVLE 540
           PP SV+E
Sbjct: 185 PPASVIE 191


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -3

Query: 611 LGHLRYSLTDVPPQSNS--PPGSVLEPDHAGVLNGDGVSATSPLCTLGTKHRAP 456
           L H  YSLT VPP+       G  L+ D   +L   G+   + L  +GT    P
Sbjct: 26  LKHQLYSLTQVPPERQKVIVKGGQLKDD--VLLGSVGIKPNATLLMMGTAGELP 77


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -3

Query: 518 NGDGVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTS 339
           NG  + A +   T+  KH      ID  P P + +  E ++ V   R+ R ++ H+    
Sbjct: 47  NGSVIGAQNDFLTV-PKHSGKKVPIDTTPTPRDEILLENVRTV---RKQRSSLYHISENR 102

Query: 338 H-VSLQCQTRVKLNR 297
           + V L   T V +N+
Sbjct: 103 NLVRLPSFTDVPVNK 117


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 696  SPYAY*TSGSSQLLPFCSTRGF 631
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,636
Number of Sequences: 5004
Number of extensions: 62256
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)