Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1171
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    33   0.24 
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    29   2.9  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   5.1  
11_05_0084 + 18962892-18963383                                         28   6.8  

>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = -3

Query: 662 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDGVSATSPLC 483
           +F P+ P     LA  + GH R+ + D   +  S  G   + D +  +    VSA + LC
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMEDEIEEELSLAGIFNKGDRSYAVRRAAVSAYAALC 425

Query: 482 TLGTKHRAPADIIDR 438
            +   H AP  + DR
Sbjct: 426 AVLCAHEAPGGLPDR 440


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 578 PPQSNSPPGSVLEPDHAGVLNGDGVSATSPLCTLGTKH 465
           P  +NS P +V +PD   +LNGD +  T  L +   +H
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDEIQQTFELNSQEIQH 776


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 492 TTLHAWNETPCARRYY 445
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>11_05_0084 + 18962892-18963383
          Length = 163

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 164 GNQMPRHLISDAHEWINEIPTVPIYYLAKPR 256
           G+  PRH    A   I+ +P+  I+Y AKPR
Sbjct: 114 GHGAPRHAAEGAIVAIDLLPSASIHYRAKPR 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,091,553
Number of Sequences: 37544
Number of extensions: 465391
Number of successful extensions: 1378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)