Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1171
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    32   0.35 
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    32   0.46 
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.2  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    29   4.3  
At1g49650.1 68414.m05568 cell death associated protein-related s...    28   5.7  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    28   5.7  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   7.5  
At2g37630.1 68415.m04616 myb family transcription factor (MYB91)...    28   7.5  
At5g55330.1 68418.m06895 membrane bound O-acyl transferase (MBOA...    27   9.9  
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel...    27   9.9  
At5g05360.2 68418.m00577 expressed protein similar to unknown pr...    27   9.9  
At5g05360.1 68418.m00578 expressed protein similar to unknown pr...    27   9.9  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    27   9.9  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   9.9  

>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -3

Query: 521 LNGDGVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYT 342
           L+ + V   S    LG +H  PA +I+R P PP  +S   +++++F     E    +CY 
Sbjct: 217 LDTEDVLLVSAKTGLGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYV 274

Query: 341 SHV 333
           S V
Sbjct: 275 SVV 277


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -3

Query: 593 SLTDVPPQSNSPPGSVLEPDHAGVLNGDGVSATSPLCTLGTKHRAPADIIDRAPLPPNRV 414
           S T  PP S +PPG    P  +  ++     ATSP  ++  K  +P       P PP   
Sbjct: 169 SPTTSPPGSTTPPGGAHSPKSSSAVS----PATSPPGSMAPKSGSPVSPTTSPPAPPKST 224

Query: 413 S 411
           S
Sbjct: 225 S 225


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 618 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 731
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -3

Query: 581 VPPQSNSP-PGSVLEPDHAGVLNGDGVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNE 405
           V P S SP P +    D    +  D V   S LC LG+  R PAD I+   L   R+   
Sbjct: 26  VVPSSVSPVPENTTGADLLDSIPDDLV--ISILCKLGSTSRCPADFIN-VLLTCKRLKGL 82

Query: 404 TMKVVVFQRRSRETIS 357
            M  +V  R S + I+
Sbjct: 83  AMNPIVLSRLSPKAIA 98


>At1g49650.1 68414.m05568 cell death associated protein-related
           similar to PrMC3 [Pinus radiata] GI:5487873; weak
           similarity to cell death associated protein [Nicotiana
           tabacum] GI:7417008, hsr203J [Nicotiana tabacum]
           GI:22830761
          Length = 374

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 155 LS*GNQMPRHLISDAHEWINEIPTVPIYY 241
           L+ GN++P  +      WINE P  PIY+
Sbjct: 122 LAAGNKLPLLIYFHGGAWINESPFSPIYH 150


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 164 GNQMPRHLISDAHEWINEIPTVPIYYLAKPRQGNGLGRISGER 292
           G  +P + +SD +  INE+   P     +  + NGL +  G+R
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKR 112


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 443 DRAPLPPNRVSNETMKVVVFQRRSRET 363
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At2g37630.1 68415.m04616 myb family transcription factor (MYB91)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 367

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -3

Query: 572 QSNSPPGSVLEPDHAGVLNGDGVSATSPLCTLGTKHRAPADIIDRAPLPP 423
           Q   PP  V+ P  A   NG+ V A  P  TL     +P+ +   AP PP
Sbjct: 168 QQVQPPNPVIPPWLATSNNGNNVVARPPSVTLTL---SPSTVAAAAPQPP 214


>At5g55330.1 68418.m06895 membrane bound O-acyl transferase (MBOAT)
           family protein / wax synthase-related contains
           similarity to wax synthase  wax synthase - Simmondsia
           chinensis, PID:g5020219 similar to wax synthase
           [gi:5020219] from Simmondsia chinensis
          Length = 346

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 116 FLHVDIQSIVHKSHCFYIREAHRNSLFLLVSRIPFFCV 3
           F+ V + +I+  ++C+Y+    + SL  L+S +P  CV
Sbjct: 8   FIQVWVSAIISVTYCYYLTPKIKTSLLRLLSVLP-VCV 44


>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
           putative (CNGC18) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 706

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 107 VDIQSIVHKSHCFYIREAHRNSLFLLVSRIPFF 9
           VD +SI+H       RE  R+    LV R+PFF
Sbjct: 418 VDEESILHSLPTDLRREIQRHLCLSLVRRVPFF 450


>At5g05360.2 68418.m00577 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 153

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 434 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 324
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At5g05360.1 68418.m00578 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 163

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 434 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 324
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 361 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 254
           SPT +  + SP  A  ++ +  +S P +SPK P P++
Sbjct: 41  SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 482  TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 387
            T+G+ HR+ AD ++ +PLP   V + +   +V
Sbjct: 972  TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,401,045
Number of Sequences: 28952
Number of extensions: 347461
Number of successful extensions: 1041
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)