Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1170
         (623 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6DKE4 Cluster: Probable RNA polymerase sigma-H factor;...    38   0.26 
UniRef50_Q7QSC4 Cluster: GLP_105_16275_12307; n=1; Giardia lambl...    33   4.2  
UniRef50_UPI000049A0DA Cluster: conserved hypothetical protein; ...    32   9.7  

>UniRef50_A6DKE4 Cluster: Probable RNA polymerase sigma-H factor;
           n=1; Lentisphaera araneosa HTCC2155|Rep: Probable RNA
           polymerase sigma-H factor - Lentisphaera araneosa
           HTCC2155
          Length = 200

 Score = 37.5 bits (83), Expect = 0.26
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -2

Query: 367 RSDSLSGRYAQ*FTTVVLFKVPTFYQKKCENAKFEKE*RRDPGKKTKKTTPELQSDFDR 191
           + D    ++   F+ ++  +   FY+KKC++ K E   + DP + T  T PE++  F +
Sbjct: 68  KPDEKRAKFRTWFSQIIYRRTMDFYRKKCQSDKKEALIKNDPSELTSFTEPEVEKVFQK 126


>UniRef50_Q7QSC4 Cluster: GLP_105_16275_12307; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_105_16275_12307 - Giardia lamblia
           ATCC 50803
          Length = 1322

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 260 RVTSRPRKKDKKDNTGTAKRF*QNRSGLVFLTKSIRSDI 144
           R+TSR  + D+K NTG  K    NRS  + +  S RS I
Sbjct: 394 RLTSRSNEADEKANTGPPKTLQSNRSSCISMATSDRSKI 432


>UniRef50_UPI000049A0DA Cluster: conserved hypothetical protein;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
           hypothetical protein - Entamoeba histolytica HM-1:IMSS
          Length = 265

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 23/82 (28%), Positives = 36/82 (43%)
 Frame = +2

Query: 65  TF**ERFHMTSDLRAIKKNYKLSTLKECRNVYFSSETQGRIYSVKIALQFRCCLFCLFSG 244
           TF  E   MT+ L  I  + ++  LK    + F+  +  RIY   ++  F   L C F G
Sbjct: 145 TFTPETLSMTTTLCLILISLEVMILKFLEYMLFNYSSDFRIYLSYVSYVFVPVLMCTFVG 204

Query: 245 VSTLLFLEFSILTFFLVKCRYF 310
              + +L +  L FF     +F
Sbjct: 205 SLQIPYLTYIALLFFGTSYAFF 226


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,052,631
Number of Sequences: 1657284
Number of extensions: 9089308
Number of successful extensions: 18980
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18968
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)