Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1170
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_51808| Best HMM Match : OmpA (HMM E-Value=0.72)                     29   2.3  
SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)                   29   2.3  
SB_44158| Best HMM Match : OmpA (HMM E-Value=0.72)                     29   2.3  
SB_14913| Best HMM Match : DUF720 (HMM E-Value=0.47)                   29   2.3  
SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_36695| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_16760| Best HMM Match : OmpA (HMM E-Value=0.72)                     29   2.3  
SB_12817| Best HMM Match : HTH_psq (HMM E-Value=7.1)                   29   2.3  
SB_12359| Best HMM Match : zf-TRAF (HMM E-Value=9.3)                   29   3.1  

>SB_57268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 912

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 266 RERVTSRPRKKDKKDNTGTAKRF*QNRSGLVFLTKSIRSDILLMY 132
           RER+    +KK KKD+TG  +R   +++GL    ++ +   L+ Y
Sbjct: 265 RERMDEPNKKKRKKDHTGDMERMGWDKAGLKAEVEAYQGGHLINY 309


>SB_51808| Best HMM Match : OmpA (HMM E-Value=0.72)
          Length = 516

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 266 RERVTSRPRKKDKKDNTGTAKRF*QNRSGLVFLTKSIRSDILLMY 132
           RER+    +KK KKD+TG  +R   +++GL    ++ +   L+ Y
Sbjct: 272 RERMDEPNKKKRKKDHTGDMERMGWDKAGLKAEVEAYQGGHLINY 316


>SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)
          Length = 1205

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 266 RERVTSRPRKKDKKDNTGTAKRF*QNRSGLVFLTKSIRSDILLMY 132
           RER+    +KK KKD+TG  +R   +++GL    ++ +   L+ Y
Sbjct: 190 RERMDEPNKKKRKKDHTGDMERMGWDKAGLKAEVEAYQGGHLINY 234


>SB_44158| Best HMM Match : OmpA (HMM E-Value=0.72)
          Length = 406

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 266 RERVTSRPRKKDKKDNTGTAKRF*QNRSGLVFLTKSIRSDILLMY 132
           RER+    +KK KKD+TG  +R   +++GL    ++ +   L+ Y
Sbjct: 266 RERMDEPNKKKRKKDHTGDMERMGWDKAGLKAEVEAYQGGHLINY 310


>SB_14913| Best HMM Match : DUF720 (HMM E-Value=0.47)
          Length = 528

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 266 RERVTSRPRKKDKKDNTGTAKRF*QNRSGLVFLTKSIRSDILLMY 132
           RER+    +KK KKD+TG  +R   +++GL    ++ +   L+ Y
Sbjct: 114 RERMDEPNKKKRKKDHTGDMERMGWDKAGLKAEVEAYQGGHLINY 158


>SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 266 RERVTSRPRKKDKKDNTGTAKRF*QNRSGLVFLTKSIRSDILLMY 132
           RER+    +KK KKD+TG  +R   +++GL    ++ +   L+ Y
Sbjct: 330 RERMDEPNKKKRKKDHTGDMERMGWDKAGLKAEVEAYQGGHLINY 374


>SB_36695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 266 RERVTSRPRKKDKKDNTGTAKRF*QNRSGLVFLTKSIRSDILLMY 132
           RER+    +KK KKD+TG  +R   +++GL    ++ +   L+ Y
Sbjct: 272 RERMDEPNKKKRKKDHTGDMERMGWDKAGLKAEVEAYQGGHLINY 316


>SB_16760| Best HMM Match : OmpA (HMM E-Value=0.72)
          Length = 933

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 266 RERVTSRPRKKDKKDNTGTAKRF*QNRSGLVFLTKSIRSDILLMY 132
           RER+    +KK KKD+TG  +R   +++GL    ++ +   L+ Y
Sbjct: 272 RERMDEPNKKKRKKDHTGEMERMGWDKAGLKAEVEAYQGGHLINY 316


>SB_12817| Best HMM Match : HTH_psq (HMM E-Value=7.1)
          Length = 174

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 266 RERVTSRPRKKDKKDNTGTAKRF*QNRSGLVFLTKSIRSDILLMY 132
           RER+    +KK KKD+TG  +R   +++GL    ++ +   L+ Y
Sbjct: 102 RERMDEPNKKKRKKDHTGDMERMGWDKAGLKAEVEAYQGGHLINY 146


>SB_12359| Best HMM Match : zf-TRAF (HMM E-Value=9.3)
          Length = 90

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 119 FF*LLLNPMSCETALTKM*CNKYIYVERKRERESNRQ 9
           FF   L   SCE ALT   C  Y++  +K E  S  Q
Sbjct: 17  FFDKKLKGTSCEQALTNCECKTYLFFHKKLEGTSCEQ 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,411,466
Number of Sequences: 59808
Number of extensions: 293638
Number of successful extensions: 689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)