Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1170
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical
           protein T03D8.5 protein.
          Length = 1012

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 258 SNVETPEKRQKRQHRNCKAILTE*IRPCVSDEKYTFRHSFNVLN 127
           S V+ P+K      R+ ++ +T   +  ++ +K T RHSF  LN
Sbjct: 468 SLVKPPQKNTMHSSRSLQSTVTTSTKVTINSKKDTERHSFYFLN 511


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 185 IYSVKIAL-QFRCCLFCLFSGVSTLLFLEFSILTFFLVKCRYFK*HYC 325
           IY +  AL  F  C+   FS    ++F +FS++  F   C+Y    +C
Sbjct: 59  IYILNFALFDFATCIISFFS-CQQVIFSDFSLVYIFHGPCKYVSPWFC 105


>U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical
           protein C56G2.1a protein.
          Length = 867

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 291 RKNVRMLNSRKSNVETPEKRQKR 223
           +K  R L   KS  ETPEK QKR
Sbjct: 435 KKGQRRLTKEKSVEETPEKSQKR 457


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,511,005
Number of Sequences: 27780
Number of extensions: 238473
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)