Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1170
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30820.1 68416.m03953 hypothetical protein                          29   3.3  
At1g21170.1 68414.m02647 expressed protein                             29   3.3  
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ...    28   4.4  

>At3g30820.1 68416.m03953 hypothetical protein 
          Length = 405

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 252 VETPEKRQKRQHRNCKAILTE*IRPCV 172
           +E+  K     HR C+AIL   IRPCV
Sbjct: 313 IESTRKNNSMMHRMCRAILK--IRPCV 337


>At1g21170.1 68414.m02647 expressed protein
          Length = 1090

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 361 DSLSGRYAQ*FTTVVLFKVPTFYQ 290
           D+L GRY +  T V+++ +PTF++
Sbjct: 515 DALRGRYIKILTAVIVYHLPTFWK 538


>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 381

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +2

Query: 215 RCCLFCLFSGVSTLLFLEFS 274
           RCCLFC  S  STLL L  S
Sbjct: 195 RCCLFCSHSPTSTLLNLSRS 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,305,955
Number of Sequences: 28952
Number of extensions: 203047
Number of successful extensions: 385
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)