Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1168
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    30   0.32 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    29   0.55 
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    29   0.73 
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    29   0.97 
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      27   2.2  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    27   3.0  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   3.9  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    26   5.2  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   9.0  

>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +1

Query: 43  DVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDA 183
           D ++  F T    G KD VP +   GD+   E  EASN I S   D+
Sbjct: 58  DAELFMFDTGSADGAKDSVPLDIIAGDNTVKEDEEASNEIPSIWEDS 104


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 724  IILWHFFFVFWKITKINIVSI*YLVFSE*NWY---ILTSRYYYKSLLYIA 584
            I + +F  VF ++  INI+SI  LV +   W+   I  S +Y    LY+A
Sbjct: 1427 IFIMNFKLVFIEMQYINIISIIVLVLTSLAWFLFNIFISEHYPDKNLYLA 1476


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 254 YAFCGLKFSCLKGFDSGVTLIFPVASDTSERI 159
           YA+CGL   CL  ++  +     V +DTS+ I
Sbjct: 190 YAYCGLANFCLGDYEEALAHFLKVETDTSDGI 221


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 288 WIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTR--VLQNTEPA-AFKQYFFT 440
           W GK  +  +K  A +      + K +  W Q+TR  VLQ  + +  FK  ++T
Sbjct: 304 WTGKNISETQKIVAYSHLYSFTSVKCFVHWAQITRRKVLQMYDDSPGFKPSYYT 357


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 520 LFPCFRKYVRAFSF 479
           LFP FRKY+  FSF
Sbjct: 240 LFPIFRKYIHVFSF 253


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 100 PDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSKPFKQ 228
           P+E    D++E ++ E+ +  L E+S +   ++  P    FK+
Sbjct: 34  PEEQEKKDEKEDDKEESPSKSLEEISQSVSPVEEEPRDVRFKE 76


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 309 ANEKSQAMTKAQELLNAKNYPS-WVQVTRVLQNT--EPAAFKQYFFTWRDFGMSHS 467
           A++ S  + K ++   +K+    W +  + L+N   EPA+ ++Y   W DF  S++
Sbjct: 174 ASQISNKLEKEKDATGSKSIEELWEEHQKQLKNAGLEPASLEEYQKQWEDFLKSNN 229


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 177 RRHGKDQSDATIEAFQARELESTERVILDTI 269
           R+ G D+ D+ I  +  +ELE+TE  I DTI
Sbjct: 151 RKLGDDRVDSLI-VYATQELENTETQIKDTI 180


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 103 DESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSKP 219
           D+S  GDD++     A + ++  + D   KI   PL  P
Sbjct: 562 DDSFSGDDKQVVDVVAPSFVIPRLDDILNKIADKPLYSP 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,976
Number of Sequences: 5004
Number of extensions: 63887
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)