Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1168
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 47 2e-05
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 46 3e-05
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 36 0.047
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 35 0.082
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299... 31 1.0
03_02_0021 - 5049705-5049713,5049744-5049770,5049877-5049940,505... 30 1.8
05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12... 29 4.1
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 29 4.1
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349... 28 9.4
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042... 28 9.4
>03_03_0001 +
13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/70 (30%), Positives = 38/70 (54%)
Frame = +3
Query: 234 LESTERVILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEP 413
LE+ + ++D S ++++W+G+ E+ A +E + +N P +VTRV+Q E
Sbjct: 280 LENNKCFLVDCGS-DLFIWVGRLTQVEERKAASAAVEEFIATQNRPKTTRVTRVIQGYEN 338
Query: 414 AAFKQYFFTW 443
FK F +W
Sbjct: 339 HTFKSKFESW 348
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Frame = +3
Query: 219 FQARELESTERVILDTISGNIYVWIGKQATANEKSQAMTKAQELL-NAKNYPSW---VQV 386
F +L + + ++LDT G ++VW+G+ A EK +A Q+ +A + S V +
Sbjct: 676 FSQDDLLTEDMMVLDT-HGEVFVWMGQCVDAKEKQKAFEIGQKYAEHAAAFESLSPDVPL 734
Query: 387 TRVLQNTEPAAFKQYFFTW 443
+V++ EP F+ Y F+W
Sbjct: 735 YKVVEGNEPCFFRTY-FSW 752
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +3
Query: 234 LESTERVILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEP 413
L+ST+ +LD S IYVW+G++ E+ +A + A+ELL N P + R+++ E
Sbjct: 336 LDSTKCYLLDCGS-EIYVWMGRETPLEERKRAGSAAEELLREVNRPK-SHIVRLMEGFET 393
Query: 414 AAFKQYFFTW 443
F+ F W
Sbjct: 394 VIFRSKFSKW 403
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 35.5 bits (78), Expect = 0.047
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +3
Query: 243 TERVILDTISGNIYVWIGKQATANEKSQAMTKAQELLN----AKNYPSWVQVTRVLQNTE 410
TE V + +I+VW+G+Q + QA+ ++ + +N S + +++ +E
Sbjct: 650 TEDVFILDCHSDIFVWVGQQVDVKVRLQALDIGEKFVKLDFLMENLSSDTPIFVIMEGSE 709
Query: 411 PAAFKQYFFTW 443
P F + FFTW
Sbjct: 710 PTFFTR-FFTW 719
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 34.7 bits (76), Expect = 0.082
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +3
Query: 210 IEAFQARELESTERVILDTISGNIYVWIGKQATANEKSQAMTKAQELL----NAKNYPSW 377
I F +L + + +LD + +++VW+G++ A +SQAM ++ L +N
Sbjct: 619 IHHFTQDDLMAEDIFVLDCRT-DLFVWVGQEVDAKLRSQAMDIGEKFLLHDFLMENLSQD 677
Query: 378 VQVTRVLQNTEPAAFKQYFFTW 443
+ V + +EP F + FFTW
Sbjct: 678 TPIFIVTEGSEPQFFTR-FFTW 698
>05_01_0383 +
2990812-2990855,2991364-2991463,2991554-2991622,
2991724-2991960,2992045-2992228,2992307-2992442,
2992529-2992691,2992958-2993108,2993154-2993278,
2993349-2993504,2993792-2993860,2993951-2994019,
2994127-2994264,2994626-2994773,2994856-2994866,
2995212-2995352,2995441-2995569,2995860-2995899,
2996020-2996348,2996902-2996919
Length = 818
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/72 (18%), Positives = 34/72 (47%)
Frame = +3
Query: 228 RELESTERVILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNT 407
RE+ +++R + +++W+G +E+ ++T ++ + + S + + +
Sbjct: 273 REMLNSDRNYILDCGTEVFLWMGMTTLVSERRTSVTALEDYVRCEGRQSNARSVILTEGH 332
Query: 408 EPAAFKQYFFTW 443
E FK +F W
Sbjct: 333 ETVEFKMHFQHW 344
>03_02_0021 -
5049705-5049713,5049744-5049770,5049877-5049940,
5050019-5050806,5050888-5051046,5051778-5052419
Length = 562
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +1
Query: 64 FTALGSGVKDLVPDESTGGDDQEFERNEASN----VILSEVSDATGKIKVTPLSKPFKQE 231
+++ S KDL D+ D + + +EA+ VI+ E D K+ P S+P +
Sbjct: 358 YSSRSSSGKDLYQDKQL--DSAKLKSSEAAEPDHMVIVKEEEDK----KIGPFSRPSAKT 411
Query: 232 NLSPQNA*FWTPYLATFTFGSGSRL 306
N WTP +++ F S +L
Sbjct: 412 ETHDLNQAIWTPNVSSTPFSSSPKL 436
>05_01_0018 +
125697-126130,126231-126356,126726-126825,126950-126969,
127118-127220,127331-127469,127577-127791,127873-128523
Length = 595
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 1 HGRGRVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTG---GDDQEFERNEAS 153
HG V + Y D D ++F GSG +DL ++ T DQ+FE+ A+
Sbjct: 119 HGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSSDQKFEKLNAA 172
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 1 HGRGRVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGD---DQEFERNEAS 153
HG V + Y D D ++F GSG +DL ++ T + DQ+FE+ A+
Sbjct: 308 HGAQSVALSGGYLDDEDHGEWFLYTGSGGRDLSGNKRTSKEQSFDQKFEKLNAA 361
>07_03_1304 -
25629822-25629839,25630091-25631148,25631784-25634928,
25635454-25636293
Length = 1686
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +3
Query: 246 ERVILDTISGNIYVW-----IGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVL 398
+R+IL ++SGNI ++ G Q + +++ + + LL + P WV T +L
Sbjct: 825 KRIILTSLSGNIAMFSGHERFGYQVISTDQAVKLHPSCSLLIYDSKPEWVVFTEIL 880
>04_04_1657 -
35102751-35102868,35102987-35103504,35104065-35104211,
35104289-35106262,35106964-35107089,35107178-35107264,
35107335-35107424,35107725-35107811,35108248-35108300,
35109339-35109387
Length = 1082
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = +2
Query: 287 LDREAGYRKREISGHDESSGIVER*ELSFVGASDQSSTEHGACSIQAVLLHLARLRNVSL 466
LD +A + ++ + I++ ++ F+GA+DQ + S L RL N++
Sbjct: 740 LDVKAAKQTKKYDYPPQFPAILQLKDIPFIGAADQQPNDSTYSS------PLLRLPNLNS 793
Query: 467 ASHLKAKSTYVLPEAREKL 523
+S L ++S +L +A E L
Sbjct: 794 SSSLSSESFDILRDANELL 812
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,106,142
Number of Sequences: 37544
Number of extensions: 378656
Number of successful extensions: 958
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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