Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1168
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical pr... 72 4e-13
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho... 35 0.073
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi... 35 0.073
U41557-8|AAA83308.2| 229|Caenorhabditis elegans Hypothetical pr... 31 1.2
U41557-7|AAQ01534.1| 381|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL132948-37|CAD31830.2| 410|Caenorhabditis elegans Hypothetical... 30 1.6
AL023844-6|CAA19532.1| 551|Caenorhabditis elegans Hypothetical ... 30 1.6
AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical ... 30 1.6
Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical pr... 29 4.8
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 28 6.4
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 28 6.4
>Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical
protein K06A4.3 protein.
Length = 475
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/79 (40%), Positives = 46/79 (58%)
Frame = +3
Query: 213 EAFQARELESTERVILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTR 392
E + +L+ + ILD I+G I+VWIG + T E+S+A+ Q L + P W QVTR
Sbjct: 272 ENIRKEQLDPKDAFILDAINGGIFVWIGHECTLEERSKALIWGQNYLKQHHLPRWTQVTR 331
Query: 393 VLQNTEPAAFKQYFFTWRD 449
VL++ E F Q+F W D
Sbjct: 332 VLESAESTQFTQWFRDWVD 350
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 210 IEAFQARELESTERVILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYP--SWVQ 383
I F +L+ + +ILD ++ +IYVW+G A ANEK +A+ A+ L P
Sbjct: 376 IANFTQEDLDGDDVMILDALN-SIYVWVGANANANEKKEALNTAKLYLEKDKLPRHKKTA 434
Query: 384 VTRVLQNTEPAAFKQYFFTWRD 449
+ + Q EP FK++F +W D
Sbjct: 435 IDTIFQGKEPPTFKKFFPSWDD 456
Score = 32.7 bits (71), Expect = 0.30
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +1
Query: 4 GRGRVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDA 183
G +V I+D D D F++ G GV + DD + + + L +VSDA
Sbjct: 202 GIPKVHILDDVEWDND-STFWSYFG-GVSSVRKVSKGKDDDDNYWKRLTEQITLWKVSDA 259
Query: 184 TGKIKVTPLS--KPFKQENLSPQNA 252
+G KV+ +S + ++E L P++A
Sbjct: 260 SGAAKVSMVSQGENIRKEQLDPKDA 284
>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
homolog protein.
Length = 1257
Score = 34.7 bits (76), Expect = 0.073
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +3
Query: 255 ILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEPAAFKQYF 434
+LD+ S +I++WIGK+A K EL + P + QV R + E F+ F
Sbjct: 777 VLDSNS-DIFLWIGKKANRLLKMAGQKLVVELHQMIDRPDYAQVYRETEGEESMMFRSKF 835
Query: 435 FTW 443
W
Sbjct: 836 AGW 838
>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
flightless) homologprotein 1 protein.
Length = 1257
Score = 34.7 bits (76), Expect = 0.073
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +3
Query: 255 ILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEPAAFKQYF 434
+LD+ S +I++WIGK+A K EL + P + QV R + E F+ F
Sbjct: 777 VLDSNS-DIFLWIGKKANRLLKMAGQKLVVELHQMIDRPDYAQVYRETEGEESMMFRSKF 835
Query: 435 FTW 443
W
Sbjct: 836 AGW 838
>U41557-8|AAA83308.2| 229|Caenorhabditis elegans Hypothetical
protein C50F7.1a protein.
Length = 229
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 613 YYYKSLLYIAFQPSIYIRLYHKYK*FSFRLELFPCFRKYVRAFS 482
+ + SLL + P IYI HKY+ + L PC +Y R S
Sbjct: 136 FQWMSLLSSSLNPIIYIAYSHKYRRAFKSILLMPCKTRYERVRS 179
>U41557-7|AAQ01534.1| 381|Caenorhabditis elegans Hypothetical
protein C50F7.1b protein.
Length = 381
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 613 YYYKSLLYIAFQPSIYIRLYHKYK*FSFRLELFPCFRKYVRAFS 482
+ + SLL + P IYI HKY+ + L PC +Y R S
Sbjct: 288 FQWMSLLSSSLNPIIYIAYSHKYRRAFKSILLMPCKTRYERVRS 331
>AL132948-37|CAD31830.2| 410|Caenorhabditis elegans Hypothetical
protein Y39B6A.38 protein.
Length = 410
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 40 SDVDVQKFFTALGSGVKDLVPDESTGGDDQEFER 141
S+ DV+ FF+ +G + DL+ +E D Q ER
Sbjct: 328 SEEDVKSFFSKIGHQIDDLIGEEIQATDGQGIER 361
>AL023844-6|CAA19532.1| 551|Caenorhabditis elegans Hypothetical
protein Y48A6B.8 protein.
Length = 551
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 1 HGRGRVDIVDKYSSDVDVQ-KFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVS 177
HG G D ++ D ++ + + G+G +D V +E G ++QE E N A + SE+S
Sbjct: 85 HGYGIEDDIEDEIDDEELDDEEYEESGNGNEDEV-EEEVGVEEQEIENNFAYKKVKSEIS 143
>AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical
protein Y67D2.6 protein.
Length = 732
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 282 YVWIGKQATANEKSQA-MTKAQELLNAKNYPSWVQVTRVLQNT 407
Y + GK T E M K ++ K+YP WV T V+Q++
Sbjct: 643 YHYTGKYMTVKESFPFNMYKGSSIMFKKDYPKWVIFTEVMQDS 685
>Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical
protein F49C5.3 protein.
Length = 551
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 1 HGRG-RVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVS 177
HG G DI D+ + + + G+G +D V +E ++QE E N A + SE+S
Sbjct: 85 HGYGIEDDIEDEIDDEESDDEEYEESGNGSEDEV-EEEVRVEEQEIENNFAYKKVKSEIS 143
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 25 VDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVT 204
VD+ S+ + + S V ++ ++S E E+ SN+ +S + T
Sbjct: 2806 VDQQISEHQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIISCDLASMSST 2865
Query: 205 PLSKPFKQENLSPQNA 252
S F+++ L PQNA
Sbjct: 2866 SNSFEFQRDILEPQNA 2881
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 25 VDKYSSDVDVQKFFTALGSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVT 204
VD+ S+ + + S V ++ ++S E E+ SN+ +S + T
Sbjct: 2806 VDQQISEHQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIISCDLASMSST 2865
Query: 205 PLSKPFKQENLSPQNA 252
S F+++ L PQNA
Sbjct: 2866 SNSFEFQRDILEPQNA 2881
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,813,155
Number of Sequences: 27780
Number of extensions: 341090
Number of successful extensions: 861
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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