Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1168
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil...    55   5e-08
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil...    52   3e-07
At4g30160.1 68417.m04289 villin, putative similar to  villin 2 (...    38   0.006
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V...    36   0.022
At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to vil...    32   0.48 
At3g57600.1 68416.m06417 AP2 domain-containing transcription fac...    29   3.4  
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa...    29   3.4  
At1g74010.1 68414.m08571 strictosidine synthase family protein s...    29   4.5  
At4g33750.1 68417.m04792 expressed protein                             28   6.0  
At3g26430.1 68416.m03294 GDSL-motif lipase/hydrolase family prot...    28   6.0  

>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin
           2 (VLN2) [Arabidopsis thaliana] GI:3415115
          Length = 976

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 26/70 (37%), Positives = 40/70 (57%)
 Frame = +3

Query: 234 LESTERVILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEP 413
           LE+T+  +LD     IY+W+G+    +E+  A   A+E L ++N P    VTRV+Q  E 
Sbjct: 274 LENTKCYLLDC-GAEIYIWVGRVTQVDERKAASQSAEEFLASENRPKATHVTRVIQGYES 332

Query: 414 AAFKQYFFTW 443
            +FK  F +W
Sbjct: 333 HSFKSNFDSW 342


>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
           3 (VLN3) [Arabidopsis thaliana] GI:3415117
          Length = 965

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/70 (32%), Positives = 42/70 (60%)
 Frame = +3

Query: 234 LESTERVILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEP 413
           LE+ +  +LD  S  I++W+G+     E+  A+  A++ + ++N P   ++TRV+Q  EP
Sbjct: 276 LENNKCYLLDCGS-EIFIWVGRVTQVEERKTAIQAAEDFVASENRPKATRITRVIQGYEP 334

Query: 414 AAFKQYFFTW 443
            +FK  F +W
Sbjct: 335 HSFKSNFDSW 344


>At4g30160.1 68417.m04289 villin, putative similar to  villin 2
           (VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
           (VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
           profiles PF00626: Gelsolin repeat, PF02209: Villin
           headpiece domain
          Length = 974

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 16/72 (22%), Positives = 37/72 (51%)
 Frame = +3

Query: 228 RELESTERVILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNT 407
           RE+  T +  +      ++VW+G+  + +++  A   A+E++ +   P   Q+ R+++  
Sbjct: 274 REMLDTNKCYILDCGIEVFVWMGRTTSLDDRKIASKAAEEMIRSSERPK-SQMIRIIEGF 332

Query: 408 EPAAFKQYFFTW 443
           E   F+  F +W
Sbjct: 333 ETVPFRSKFESW 344


>At5g57320.1 68418.m07160 villin, putative similar to villin 2
           (VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
           (VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
           profiles PF00626: Gelsolin repeat, PF02209: Villin
           headpiece domain
          Length = 962

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 19/85 (22%), Positives = 37/85 (43%)
 Frame = +3

Query: 189 KDQSDATIEAFQARELESTERVILDTISGNIYVWIGKQATANEKSQAMTKAQELLNAKNY 368
           K Q+DA       +EL  T +  +      ++VW G+  + +++  A   A+E   +   
Sbjct: 261 KGQTDAVEAECLTKELLDTNKCYILDCGLELFVWKGRSTSIDQRKSATEAAEEFFRSSEP 320

Query: 369 PSWVQVTRVLQNTEPAAFKQYFFTW 443
           P    +  V++  E   F+  F +W
Sbjct: 321 PK-SNLVSVMEGYETVMFRSKFDSW 344



 Score = 35.5 bits (78), Expect = 0.039
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +3

Query: 243 TERVILDTISGNIYVWIGKQATANEKSQAMTKAQELLN----AKNYPSWVQVTRVLQNTE 410
           TE + +      ++VW+G+Q    +K QA+   +  L      +N  S   +  V +  E
Sbjct: 651 TEDIFILDCHTEVFVWVGQQVDPKKKPQALDIGENFLKHDFLLENLASETPIYIVTEGNE 710

Query: 411 PAAFKQYFFTW 443
           P  F + FFTW
Sbjct: 711 PPFFTR-FFTW 720


>At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to villin
           1 (VLN1) [Arabidopsis thaliana] GI:3415113
          Length = 909

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
 Frame = +3

Query: 240 STERVILDTISGNIYVWIGKQATANEKSQAMTKAQELLN----AKNYPSWVQVTRVLQNT 407
           +TE V L      +YVWIG  +    K +A+T   + L      +       V  V +  
Sbjct: 645 TTEDVFLLDCQSEVYVWIGSNSNIKSKEEALTLGLKFLEMDILEEGLTMRTPVYVVTEGH 704

Query: 408 EPAAFKQYFFTW 443
           EP  F + FF W
Sbjct: 705 EPPFFTR-FFEW 715



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 279 IYVWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEPAAFKQYF 434
           +YVWIG ++   +++ A+T A  ++      S   +  + Q  EP+ F   F
Sbjct: 434 LYVWIGCESIQQDRADAITNASAIVGTTKGES--VLCHIYQGNEPSRFFPMF 483


>At3g57600.1 68416.m06417 AP2 domain-containing transcription
           factor, putative various proteins containing an AP2
           transcription factor domain, Arabidopsis thaliana
          Length = 277

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 285 VWIGKQATANEKSQAMTKAQELLNAKNYPSWVQVTRVLQNTEPAAFKQYFFTW 443
           +W+G  ATA E + A  +A   L    + +++ +  + +NT P+      F W
Sbjct: 52  LWLGSFATAEEAAMAYDEA--ALKLYGHDAYLNLPHLQRNTRPSLSNSQRFKW 102


>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
           family protein low similarity to nuclear protein np95
           [Mus musculus] GI:4220590; contains Pfam profiles
           PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
           type (RING finger), PF00628: PHD-finger
          Length = 645

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 1   HGRGRVDIVDKYSSDVDVQKFFTALGSGVKDLVPDESTGGD---DQEFERNEAS 153
           +G   V +   Y  D D  ++F   GSG +DL  ++ T  +   DQ+FE++ A+
Sbjct: 309 YGAQSVALSGGYKDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFEKSNAA 362


>At1g74010.1 68414.m08571 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]; contains strictosidine synthase
           domain PF03088
          Length = 325

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 133 FERNEASNVILSEVSDATGKIKVTPLSKPF 222
           F +NE  N +LSEV++  G + +  L+ PF
Sbjct: 290 FLKNEFGNTLLSEVNEFNGHLYIGTLTGPF 319


>At4g33750.1 68417.m04792 expressed protein 
          Length = 148

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 76  GSGVKDLVPDESTGGDDQEFERNEASNVILSEVSDATGKIKVTPLSKPFKQENLSPQ 246
           GS   ++  +  + GDD E    E+SN+  +E+++       T +S+        PQ
Sbjct: 67  GSNTTEVNENSRSEGDDDESGEKESSNIFSTELTEEADNTSGTSISQEEMDALTDPQ 123


>At3g26430.1 68416.m03294 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037; contains InterPro Entry IPR001087 Lipolytic
           enzyme, G-D-S-L family
          Length = 380

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 341 SFRHGLRFLVCGSLLPDPNVNVARYGV 261
           +F HG  F   GS +  PN  +A+ GV
Sbjct: 97  NFSHGANFATAGSTVRPPNATIAQSGV 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,596
Number of Sequences: 28952
Number of extensions: 313093
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)