Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1167
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 46 7e-06
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 34 0.023
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.054
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.12
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 31 0.22
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.38
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.38
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 30 0.38
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.50
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.87
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 27 2.0
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 27 2.7
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.7
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 26 4.7
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 26 6.1
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 6.1
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.1
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 45.6 bits (103), Expect = 7e-06
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +2
Query: 68 RTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQE 244
+ IDPK PR Q+ K+F+GG+P + TE + R FF ++G+V++ +M D++
Sbjct: 230 KIIDPKRAIPREEQEKTA-----KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKD 283
Score = 33.9 bits (74), Expect = 0.023
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYD 238
K+F+GGL T+ LR +F ++G+V++ +M D
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRD 197
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.9 bits (74), Expect = 0.023
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEK 247
V + LPS+++E +L++FF G ++ + I+ D +K
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQK 627
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.7 bits (71), Expect = 0.054
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIM 232
VF+G LPS+ E ++ FG++GK+ + I+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL 331
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 92 NPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
N L ++ G VFLG LP+ +TE ++R +G + ++ I+ ++
Sbjct: 192 NSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 30.7 bits (66), Expect = 0.22
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +2
Query: 131 YPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
+ V++ L + +TE + FG++G++ + ++ DQ K G
Sbjct: 260 FTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRG 302
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.9 bits (64), Expect = 0.38
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYD 238
+FLGG+ +V E LR F R+G V +++ ++
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHN 440
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.9 bits (64), Expect = 0.38
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQE 244
V++ GLP N ++ +L ++ R+GKV + D E
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDME 332
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 29.9 bits (64), Expect = 0.38
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIM 232
++++GGL S++ +DL F R+G V + I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.5 bits (63), Expect = 0.50
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIM 232
++F+G +P T D+ FF YG++++ +M
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM 36
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.87
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
+F+G L T+ DL+ FG+ G++ V +M ++ K
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGK 267
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 3 MHKKHVFL-DYTVKC*LFVLLSPGPSTLSRAILALFKNRNVAVDTLRCSLAGCHRTLPKP 179
+HK VF+ DY K F + S GP T++ L + + +A +LR ++T P
Sbjct: 331 LHKTPVFVTDYPQKIKPFYMKSSGPDTVAAVDLLVPQVGELAGGSLRKDHLDEYKTYPPE 390
Query: 180 ISGY 191
+ Y
Sbjct: 391 LQWY 394
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 150 AGCHRTLPKPISG-YFSDAMGRSWRWSLCMIKR 245
AG T+PKP++G Y SD RW + KR
Sbjct: 476 AGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKR 508
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
++F+G L ++V + L F Y +++ ++ D+E K G
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRG 71
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 554 EHIPVVHVNYRPNMSATNKRSLIAANPNLVKHLXXXXXXXXXXXKTFRL 700
+ IP+ +N P ++ ++ SLI++NPN++ +L T RL
Sbjct: 373 QQIPMSEMN--PLLNLSSPTSLISSNPNMLANLPLRKHIYKDILSTLRL 419
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 85 AVQSSHSSKTE--TWRWIP*GVPWRAAIERYRNRS 183
+++ SHSS+ T IP VPWR A +YR S
Sbjct: 145 SLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNS 179
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQE 244
++FL L + E DL+ FG +G++ +V + D++
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKK 359
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEV 223
+++G LPS V+ T + F YG V +
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSI 616
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,738
Number of Sequences: 5004
Number of extensions: 61763
Number of successful extensions: 126
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -