Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1167
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 39 0.005
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 37 0.019
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 36 0.033
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 36 0.033
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 35 0.075
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 33 0.17
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 33 0.23
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 33 0.30
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 33 0.30
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 33 0.30
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 32 0.40
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 32 0.40
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.40
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 32 0.40
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.2
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 30 2.1
SB_15823| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 30 2.1
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 29 2.8
SB_27387| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_58467| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-10) 29 4.9
SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_7741| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-05) 29 4.9
SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13) 28 6.5
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 28 8.6
SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7) 28 8.6
SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 8.6
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = +2
Query: 56 IIVTRTIDPKPCNPR----------TLQKPKRGGGYP-KVFLGGLPSNVTETDLRVFFGR 202
I+ +TIDPKP PR + P+RG KVF+GGL TE DL+ +F
Sbjct: 165 ILDGKTIDPKPAVPRGPGQQAQTGAVMGGPQRGSANDGKVFIGGLAFGTTEEDLKEYFST 224
Query: 203 YGKV 214
YG V
Sbjct: 225 YGMV 228
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/38 (44%), Positives = 28/38 (73%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
V++G LP ++T +DL F RYGKV++V I+ D+E ++
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRE 49
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +2
Query: 131 YPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
+ K+F+GG+P + LR FF ++G++ E V++ D+ KK
Sbjct: 9 FTKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKK 49
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
K+F+GGL T LR +F YG++ +VV++ D KK
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKK 53
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 36.7 bits (81), Expect = 0.019
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 116 KRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKK 250
K +P V++GGL +VTE L F ++G V +VVI+ D+ K
Sbjct: 519 KMAASFP-VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGK 562
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 35.9 bits (79), Expect = 0.033
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIM 232
K+F+GGL N TE L+ +F ++G +++ VIM
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIM 82
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +2
Query: 56 IIVTRTIDPKPCNPRTLQ-KPKRGGGYPKVFLGGLPSNVTETDLRVFFGR------YGKV 214
++ R I+PK PR P+ K+F+GGL S E D++ +F G+V
Sbjct: 112 VLDDREIEPKRSVPRDESGAPEAMSKTRKIFVGGLASTTVEEDIKEYFNSLCRKNGMGEV 171
Query: 215 MEVVIMYDQEKKK 253
++V + D++ K
Sbjct: 172 IDVDLKRDRDNPK 184
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 35.9 bits (79), Expect = 0.033
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKV 214
K+F+GGL +N +E D++ +F ++GKV
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKV 209
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 34.7 bits (76), Expect = 0.075
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEV 223
+VF+G LPS V + D+ F +YG ++E+
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTILEI 386
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEV 223
+V+LG LP TE D+R FF YG++ ++
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDI 32
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
K+F+G +P E DLR F YG++ E+ I+ D+
Sbjct: 171 KLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDK 205
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIM 232
K+F+G + + E DLRV F +G + E+ ++
Sbjct: 215 KLFVGMISKHAKEEDLRVMFSPFGTIEELTVL 246
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 33.1 bits (72), Expect = 0.23
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
KVF+G + V +L+ FFG +G V+ I+ D+ KK+
Sbjct: 80 KVFVGNIGFKVRARELKDFFGYFGDVVYAQIIMDRVKKR 118
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 128 GYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLGVR 265
G ++ + +P + DLR FG +G + +V I+Y++ K VR
Sbjct: 66 GPKRLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVR 111
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 74 IDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGR-YGKVMEV 223
IDPKP P + KP K+F+GGL ++ +R +FG+ Y V E+
Sbjct: 86 IDPKPAAP--IGKPPHLR-VKKIFVGGLKPETSDEKIREYFGKAYAPVKEI 133
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYD 238
K+F+GGL T+ L+ +F +YG+++ V I D
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMD 63
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 152 GLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
GL TE DLR F +YG V + I+YD + K+
Sbjct: 187 GLSLYTTERDLRPVFEKYGPVEAIQIVYDHQAKE 220
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 32.3 bits (70), Expect = 0.40
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVI 229
+++GG+ ++++E + FGRYG+V +VVI
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKVVI 359
Score = 31.5 bits (68), Expect = 0.70
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIM 232
+++G LP N+ E D+ F RYG+V V I+
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESVKIL 38
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVI 229
+F+G + T DL+ F RYG+V++V I
Sbjct: 251 LFVGNIEKTTTYGDLKEAFERYGEVIDVDI 280
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
++F+ G TE++LR FF YG V E I+ D+
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGVVKESKIVRDK 43
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 38 KMLIICIIVTRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVM 217
K+L I+V T K ++ K+ G ++++G L N+TE ++ F +G V
Sbjct: 210 KLLGAPIMVMLTQAEKNRLAAEAERLKQPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVD 269
Query: 218 EVVIMYDQEKKK 253
V ++YD E +
Sbjct: 270 SVQLIYDSETNR 281
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLGV 262
+++ LP N E L F +YGKV+ I+ D++ GV
Sbjct: 181 LYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGV 221
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +2
Query: 98 RTLQKP---KRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
RT+Q P K+G +F+ L + E D+ +F YG+V +V I+ D+E K
Sbjct: 304 RTVQLPNEEKQGVRERTLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGK 358
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVV 226
+++GGLPS+ TE +R F ++G V+E V
Sbjct: 159 IYVGGLPSHFTEQTVREHFKKFG-VIEAV 186
>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKV 214
KVF+GGLP ++ E ++ F R+G +
Sbjct: 345 KVFVGGLPPDIDEDEIHASFCRFGSL 370
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
VF+G +P +E L+ F G V+ +++D+E K
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGK 64
>SB_15823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 135 LRCSLAGCHRTLPKPISGYFSDAMGRSWRWSLCMIKRR 248
LR GCH + K + G+ + + GR+ R+ C + RR
Sbjct: 562 LRGVATGCHTGVVKMLLGWGAKSFGRTMRFMACHLPRR 599
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYG--KVMEVVI 229
+V+LG LP E D++ FF YG K+ E+++
Sbjct: 4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREIIL 36
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEV 223
KV+ G LP+ TE DL +GKV EV
Sbjct: 4 KVYCGRLPATATEKDLENLVKVFGKVREV 32
>SB_27387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 51 FVLLSPGPSTLSRAILALFKNRNVAVDTLR 140
F LL P++L+RA++A+F + V T+R
Sbjct: 31 FYLLQTSPASLARAVMAVFVTTHKTVKTIR 60
>SB_58467| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-10)
Length = 340
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 480 STSRQCPLLNVVGTFRCLWNIKMQTSIY 563
ST C N+ GTF+CL MQ++IY
Sbjct: 168 STFAFCAANNIGGTFQCLCVFTMQSAIY 195
>SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 511 TFSRGHCLDVEYLLMVIDKYCIEH*K*LLY*KKTFNCLVNNY 386
T S HC+ YL+ D C +H K LLY KK + N Y
Sbjct: 46 TSSLEHCMGDVYLMHSKDSQCPKHLKDLLY-KKELEEVFNEY 86
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 80 PKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVI 229
P P P QK K G VF+GGLP ++ E + F G++ + I
Sbjct: 334 PPPDMPMQKQKEKPEG-CRTVFIGGLPESINEHIINEIFYVCGEITSIRI 382
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEV 223
+++GGL VTE DLR F ++G++ +
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSI 333
>SB_7741| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-05)
Length = 253
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 480 STSRQCPLLNVVGTFRCLWNIKMQTSIY 563
ST C N+ GTF+CL MQ++IY
Sbjct: 96 STFAFCAANNIGGTFQCLCVFTMQSAIY 123
>SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)
Length = 633
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 183 RSVSVTFDGSPPRNTLGYPPPRFG 112
R+++VT SP LG+PPP+ G
Sbjct: 237 RNIAVTLAISPTNGMLGHPPPKQG 260
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEV 223
VF+G LP + + L+ +F +YG+V V
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_53052| Best HMM Match : U79_P34 (HMM E-Value=2.7)
Length = 1130
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 57 LLSPGPSTLSRAILALFKNRNVAVDTLRCSLAGCHRTLPKPISGYFSDAMGRSW 218
L G S ++ +++F+ R VAV T LA HR P S D GR W
Sbjct: 809 LAGQGGSGKTKWAVSMFRGRKVAVLTPENDLAHDHRNNP---SSRLHDIKGRIW 859
>SB_34102| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 628
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 228 MTTSMTFP*RPKNTLRSVSVTFDGSPPRN 142
M+T+ T P P LRS T DG PP N
Sbjct: 1 MSTAATLPLTPPPLLRSWQPTPDGPPPDN 29
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,884,490
Number of Sequences: 59808
Number of extensions: 475961
Number of successful extensions: 1167
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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