Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1167
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 44 8e-05
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 44 8e-05
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 44 1e-04
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 42 6e-04
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 42 6e-04
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 42 6e-04
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 38 0.005
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 38 0.009
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 38 0.009
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 37 0.012
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 35 0.050
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 35 0.050
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 35 0.050
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 35 0.050
Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical pr... 34 0.088
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 34 0.12
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 34 0.12
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 34 0.12
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 34 0.12
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 33 0.20
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 33 0.20
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 33 0.20
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 33 0.27
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 33 0.27
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 33 0.27
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 33 0.27
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 32 0.35
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 32 0.35
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 32 0.35
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 32 0.35
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 32 0.35
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 32 0.47
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 32 0.47
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 32 0.47
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.47
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 32 0.47
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 32 0.47
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 32 0.47
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 32 0.47
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 32 0.47
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 32 0.47
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 32 0.47
U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical pr... 31 0.62
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 31 0.62
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 31 0.62
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 0.62
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 31 0.62
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 31 0.82
AF016684-7|AAB66206.1| 319|Caenorhabditis elegans Hypothetical ... 31 1.1
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 31 1.1
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 28 5.8
U40423-2|AAA81451.1| 160|Caenorhabditis elegans Hypothetical pr... 28 5.8
L07144-4|AAK21440.2| 187|Caenorhabditis elegans Hypothetical pr... 28 7.6
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 28 7.6
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 28 7.6
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +2
Query: 110 KPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKK 250
KP + KVF+GGLPS+ +E DLR F ++GKV ++ +D++ K
Sbjct: 102 KPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTK 148
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 119 RGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
+G K+F+GG+ V DL F +YG+V + + YD+
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDR 64
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +2
Query: 110 KPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKK 250
KP + KVF+GGLPS+ +E DLR F ++GKV ++ +D++ K
Sbjct: 102 KPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTK 148
Score = 34.7 bits (76), Expect = 0.066
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 119 RGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
+G K+F+GG+ V DL F +YG+V + + YD+
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDR 64
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +2
Query: 68 RTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEK 247
+ IDPK P+ Q K KVF+GGL + T D++ +F YGKV + ++M+D+
Sbjct: 113 KKIDPKVAFPKRTQA-KLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKAT 171
Query: 248 KK 253
++
Sbjct: 172 QR 173
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
K+F+GGL T +LR +FGR+G+V E ++M D K+
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKR 84
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +2
Query: 68 RTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEK 247
+ IDPK P+ Q K KVF+GGL + T D++ +F YGKV + ++M+D+
Sbjct: 113 KKIDPKVAFPKRTQA-KLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKAT 171
Query: 248 KK 253
++
Sbjct: 172 QR 173
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
K+F+GGL T +LR +FGR+G+V E ++M D K+
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKR 84
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 41.5 bits (93), Expect = 6e-04
Identities = 14/39 (35%), Positives = 28/39 (71%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
K+F+GGL SN T+ +R F+ ++G++ ++++M D K+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKR 62
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 41.5 bits (93), Expect = 6e-04
Identities = 14/39 (35%), Positives = 28/39 (71%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
K+F+GGL SN T+ +R F+ ++G++ ++++M D K+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKR 62
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 41.5 bits (93), Expect = 6e-04
Identities = 14/39 (35%), Positives = 28/39 (71%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
K+F+GGL SN T+ +R F+ ++G++ ++++M D K+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKR 62
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKV 214
KVF+GGLPS V E+D+ FF RYG++
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYGRL 114
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
K+F+G +P N+ E DLR F ++GK+ E I+ D+
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDK 64
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
K+F+G +P N+ E DLR F ++GK+ E I+ D+
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDK 64
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 37.1 bits (82), Expect = 0.012
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +2
Query: 131 YPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
+ K+F+GGLP + ++ L +F ++G + E V++ D+ +K
Sbjct: 34 FTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQK 74
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
++ + LPS TE LR FF +YG++ + + Y +E K G
Sbjct: 4 RLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRG 44
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 35.1 bits (77), Expect = 0.050
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEV 223
KV++GGLPS+ T +L F R+G++ +V
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKV 32
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 35.1 bits (77), Expect = 0.050
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEV 223
KV++GGLPS+ T +L F R+G++ +V
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKV 32
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 35.1 bits (77), Expect = 0.050
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEV 223
KV++GGLPS+ T +L F R+G++ +V
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKV 32
>Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical
protein C40H1.1 protein.
Length = 559
Score = 34.3 bits (75), Expect = 0.088
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVM 217
KVF+GGLP +V+E + FG +GKV+
Sbjct: 246 KVFIGGLPIDVSEEQVWATFGAFGKVL 272
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQE 244
VFLGGLP VT ++ F +G V+ V I DQ+
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQD 355
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQE 244
VFLGGLP VT ++ F +G V+ V I DQ+
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQD 355
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQE 244
VFLGGLP VT ++ F +G V+ V I DQ+
Sbjct: 107 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQD 141
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQE 244
VFLGGLP VT ++ F +G V+ V I DQ+
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQD 355
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKK 250
K+F+GGL + T+ L +F ++G V++ +++ D K
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTK 87
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKK 250
K+F+GGL + T+ L +F ++G V++ +++ D K
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTK 107
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKK 250
K+F+GGL + T+ L +F ++G V++ +++ D K
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTK 108
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
++F+GG P++ TET+LR F ++ V +V ++ + + G
Sbjct: 67 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKG 107
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 113 PKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVI 229
P+ G KV++G LP +V E ++ F +YG++ V I
Sbjct: 2 PRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI 40
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 113 PKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVI 229
P+ G KV++G LP +V E ++ F +YG++ V I
Sbjct: 2 PRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI 40
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
++F+GG P++ TET+LR F ++ V +V ++ + + G
Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKG 108
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 134 PKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMY 235
P+++LG +P N E D+ F YGK+ + + Y
Sbjct: 2 PRLYLGKIPYNARERDVERFLKGYGKINNISMKY 35
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 134 PKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMY 235
P+++LG +P N E D+ F YGK+ + + Y
Sbjct: 2 PRLYLGKIPYNARERDVERFLKGYGKINNISMKY 35
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 134 PKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMY 235
P+++LG +P N E D+ F YGK+ + + Y
Sbjct: 2 PRLYLGKIPYNARERDVERFLKGYGKINNISMKY 35
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 92 NPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
NPR + P Y +F+G + +E+ LR F YGK+ ++ +++D+ K G
Sbjct: 95 NPRASEDP-----YRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRG 145
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLGV 262
K+F+G L E +LR F ++G + + ++ DQ+ K G+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGM 184
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
K+F+G +P ETD R F +YG V I+ D+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDK 90
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVI 229
+V++G LP+ ++ D+ FF YGK+ +V++
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIM 33
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
K+F+G +P ETD R F +YG V I+ D+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDK 90
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
K+F+G L E +LR F ++G + + ++ DQ+ K G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRG 183
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
K+F+G +P ETD R F +YG V I+ D+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDK 90
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
K+F+G L E +LR F ++G + + ++ DQ+ K G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRG 183
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
+++GGL ++E D+ F +YG+VM + ++ D++ K
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGK 77
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
K+F+G +P ETD R F +YG V I+ D+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDK 90
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
K+F+G L E +LR F ++G + + ++ DQ+ K G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRG 183
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
K+F+G +P ETD R F +YG V I+ D+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDK 90
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
K+F+G L E +LR F ++G + + ++ DQ+ K G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRG 183
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
K+F+G +P ETD R F +YG V I+ D+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDK 90
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
K+F+G L E +LR F ++G + + ++ DQ+ K G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRG 183
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
K+F+G +P ETD R F +YG V I+ D+
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDK 90
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
K+F+G L E +LR F ++G + + ++ DQ+ K G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRG 183
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVI 229
+F+G +PS+V E ++R F +GKV EV I
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDI 200
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVI 229
+F+G +PS+V E ++R F +GKV EV I
Sbjct: 171 LFVGNMPSDVKEREIRHVFEEHGKVEEVDI 200
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVI 229
+F+G +PS+V E ++R F +GKV EV I
Sbjct: 148 LFVGNMPSDVKEREIRHVFEEHGKVEEVDI 177
>U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical
protein EEED8.10a protein.
Length = 738
Score = 31.5 bits (68), Expect = 0.62
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEK 247
K+ + + + VT++ L+ FF +YGK+ ++ +++K
Sbjct: 113 KIVVSNISAKVTQSQLQSFFSQYGKITSCILPREEKK 149
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 116 KRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVME 220
K+ G ++F+G LP+ V ET+L+ F +G + E
Sbjct: 110 KKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAE 144
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 116 KRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVME 220
K+ G ++F+G LP+ V ET+L+ F +G + E
Sbjct: 110 KKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAE 144
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 116 KRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVME 220
K+ G ++F+G LP+ V ET+L+ F +G + E
Sbjct: 110 KKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAE 144
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
V++ +P +VTE DL FG +G + + I+Y + +++
Sbjct: 202 VYVSNIPHSVTEDDLLFTFGSFGPLAALKILYPRSEEE 239
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKK 253
VF+G + +V+E +R F + G V+ + +++D+E K
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGK 57
>AF016684-7|AAB66206.1| 319|Caenorhabditis elegans Hypothetical
protein F45C12.7 protein.
Length = 319
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = -2
Query: 619 QTTFICRRHIRPIVHMNNRYMLVCILMFHKHLNVPTTFSRGHCLDVEYLLMVIDKY 452
+T F+ ++ ++H+ NR+ + C++ H+ V F+RG E L+ + DKY
Sbjct: 220 ETGFVNDQNAEKLLHLGNRFKISCVI--HQ---VEHHFTRGTNFSNERLIFLADKY 270
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 137 KVFLGGLPSNVTETDLRVFFGRYG 208
K+F+GG+P ++TE L+ FG +G
Sbjct: 296 KIFVGGVPWDITEAALKDSFGEFG 319
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
V++G + T+ DLR F YG + EV I Q
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQ 272
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 107 QKPKRGGGYPKVFLG--GLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
Q+ R P LG L S TE DLR FG +G++ + ++YD+
Sbjct: 65 QQYDRENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDR 111
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 140 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQE 244
V++G +P TE ++ +F G V V I+YD+E
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRE 42
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 128 GYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQE 244
G V++G P TE +L FF G++ V I+ D+E
Sbjct: 3 GIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRE 41
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 110 KPKRGGGYPKVFLGGLPSNVTETDLRVFF-GRYGKVMEVVIMYDQEKKK 253
K K G +F+G LP +TE L FF + G V V I+ D++ K
Sbjct: 238 KKKEFGKDMAIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGK 286
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 155 LPSNVTETDLRVFFGRYGKVMEVVIMYDQ 241
LP + E +LR FG+ G+V+ + I D+
Sbjct: 183 LPQEMNEDELRDLFGKIGRVIRIFIARDK 211
>U40423-2|AAA81451.1| 160|Caenorhabditis elegans Hypothetical
protein C24H10.3 protein.
Length = 160
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 374 NQCKIIIY*AIKGFFLIK*SFSMFNTIFVYYHK*VFHIQAVPSAKCS 514
++C ++ F + +F +FN IF+++H FH+ A+CS
Sbjct: 18 DECTYLLLSPFYQFPALSTAFPLFN-IFLFFHSHSFHVLTSVCARCS 63
>L07144-4|AAK21440.2| 187|Caenorhabditis elegans Hypothetical
protein R05D3.8 protein.
Length = 187
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 137 KVFLGGLP-SNVTETDLRVFFGRYGKVMEVVIMYDQE 244
++F+ P +T +L++ FG YGK+ +V + D E
Sbjct: 32 RLFVSYFPLDRLTSKELKMNFGAYGKITDVEFVSDSE 68
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 113 PKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
P+ G V L GLP +VT D+ F V + +++ DQ++ + G
Sbjct: 116 PRSSGPDSIVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPG 164
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 113 PKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKLG 259
P+ G V L GLP +VT D+ F V + +++ DQ++ + G
Sbjct: 116 PRSSGPDSIVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPG 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,621,120
Number of Sequences: 27780
Number of extensions: 364961
Number of successful extensions: 818
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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